getPPM {transite}R Documentation

Get Position Probability Matrix (PPM) from motif object

Description

Return the position probability matrix of the specified motif.

Usage

getPPM(motif)

Arguments

motif

object of class RBPMotif

Value

The position probability matrix of the specified motif

See Also

Other motif functions: generateIUPACByKmers, generateIUPACByMatrix, generateKmersFromIUPAC, getMotifById, getMotifByRBP, getMotifs, initIUPAClookupTable, motifsMetaInfo, setMotifs

Examples

getPPM(getMotifById("M178_0.6")[[1]])
[Package transite version 1.5.0 Index]