| generatePermutedEnrichments {transite} | R Documentation |
Calculates k-mer enrichment values for randomly sampled (without replacement) foreground sets.
generatePermutedEnrichments(n.transcripts.foreground, background.set, k, n.permutations = 1000, n.cores = 4)
n.transcripts.foreground |
number of transcripts in the original foreground set |
background.set |
character vector of DNA or RNA sequences that constitute the background set |
k |
length of k-mer, either |
n.permutations |
number of permutations to perform |
n.cores |
number of computing cores to use |
The result of calculateKmerEnrichment for the
random foreground sets.
Other k-mer functions: calculateKmerEnrichment,
checkKmers,
computeKmerEnrichment,
drawVolcanoPlot,
empiricalEnrichmentMeanCDF,
generateKmers,
homopolymerCorrection,
permTestGeometricMean,
runKmerSPMA, runKmerTSMA