calculateKmerScores {transite}R Documentation

k-mer Score Calculation

Description

C++ implementation of k-mer score calculation

Usage

calculateKmerScores(kmers, pwm)

Arguments

kmers

list of k-mers

pwm

position weight matrix

Value

list of PWM scores for the specified k-mers

Examples

motif <- getMotifById("M178_0.6")[[1]]
kmers <- c("AAAAAA", "CAAAAA", "GAAAAA")
calculateKmerScores(kmers, as.matrix(motifMatrix(motif)))
[Package transite version 1.5.0 Index]