| tidybulk_SAM_BAM {tidybulk} | R Documentation |
tidybulk_SAM_BAM() creates a 'tt' object from a 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |
tidybulk_SAM_BAM(file_names, genome = "hg38", ...)
file_names |
A character vector |
genome |
A character string |
... |
Further parameters passed to the function Rsubread::featureCounts |
This function is based on FeatureCounts package. This function created a tidybulk object and is useful if you want to avoid to specify .sample, .transcript and .abundance arguments all the times. The tidybulk object have an attribute called tt_internals where these three arguments are stored as metadata. They can be extracted as attr(<object>, "tt_internals").
A 'tidybulk' object