| tidybulk {tidybulk} | R Documentation |
tidybulk() creates a 'tt' object from a 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |
tidybulk(.data, .sample, .transcript, .abundance, .abundance_scaled = NULL)
.data |
A 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> | |
.sample |
The name of the sample column |
.transcript |
The name of the transcript/gene column |
.abundance |
The name of the transcript/gene abundance column |
.abundance_scaled |
The name of the transcript/gene scaled abundance column |
This function created a tidybulk object and is useful if you want to avoid to specify .sample, .transcript and .abundance arguments all the times. The tidybulk object have an attribute called tt_internals where these three arguments are stored as metadata. They can be extracted as attr(<object>, "tt_internals").
A 'tidybulk' object
my_tt = tidybulk(tidybulk::counts_mini, sample, transcript, count)