test_gene_enrichment,spec_tbl_df-method {tidybulk}R Documentation

test_gene_enrichment

Description

test_gene_enrichment

Usage

## S4 method for signature 'spec_tbl_df'
test_gene_enrichment(
  .data,
  .formula,
  .sample = NULL,
  .entrez,
  .abundance = NULL,
  .contrasts = NULL,
  species,
  cores = 10
)

Arguments

.data

A 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |

.formula

A formula with no response variable, representing the desired linear model

.sample

The name of the sample column

.entrez

The ENTREZ doce of the transcripts/genes

.abundance

The name of the transcript/gene abundance column

.contrasts

= NULL,

species

A character. For example, human or mouse

cores

An integer. The number of cores available

Value

A 'tbl' object

[Package tidybulk version 0.99.23 Index]