| impute_abundance,tbl_df-method {tidybulk} | R Documentation |
impute_abundance
## S4 method for signature 'tbl_df' impute_abundance( .data, .formula, .sample = NULL, .transcript = NULL, .abundance = NULL )
.data |
A 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> | |
.formula |
A formula with no response variable, representing the desired linear model where the first covariate is the factor of interest and the second covariate is the unwanted variation (of the kind ~ factor_of_intrest + batch) |
.sample |
The name of the sample column |
.transcript |
The name of the transcript/gene column |
.abundance |
The name of the transcript/gene abundance column |
A 'tbl' with imputed abundnce