aggregate_duplicates,tbl_df-method {tidybulk}R Documentation

aggregate_duplicates

Description

aggregate_duplicates

Usage

## S4 method for signature 'tbl_df'
aggregate_duplicates(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL,
  aggregation_function = sum,
  keep_integer = TRUE
)

Arguments

.data

A 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |

.sample

The name of the sample column

.transcript

The name of the transcript/gene column

.abundance

The name of the transcript/gene abundance column

aggregation_function

A function for counts aggregation (e.g., sum, median, or mean)

keep_integer

A boolean. Whether to force the aggregated counts to integer

Value

A 'tbl' object with aggregated transcript abundance and annotation

[Package tidybulk version 0.99.23 Index]