Package: structToolbox
Type: Package
Title: Some tools bult using the struct package
Version: 0.99.8
Author: Gavin Rhys Lloyd
Maintainer: Gavin Rhys Lloyd <g.r.lloyd@bham.ac.uk>
Description: Extends the class templates provided by the struct package to 
    provide PCA, PLS models with cross-validation, permutation testing etc. Also 
    includes a suite of univariate tests and data processing models for building
    complete workflows.
License: GPL-3
Encoding: UTF-8
LazyData: true
Collate: 'AUC_metric_class.R' 'entity_objects.R' 'DFA_class.R'
        'anova_class.R' 'HSD_class.R' 'mixed_effect_class.R'
        'HSDEM_class.R' 'MTBLS79_dataset_class.R' 'PCA_class.R'
        'PCA_plotfcns.R' 'PLSDA_class.R' 'PLSDA_charts.R'
        'PLSR_class.R' 'as_data_frame_doc.R' 'autoscale_class.R'
        'balanced_accuracy_class.R' 'blank_filter_class.R'
        'bootstrap_class.R' 'calculate_doc.R' 'chart_plot_doc.R'
        'classical_lsq_class.R' 'confounders_clsq_class.R'
        'constant_sum_norm_class.R' 'corr_coef_class.R'
        'd_ratio_filter_class.R' 'dataset_chart_classes.R'
        'factor_barchart_class.R' 'feature_profile_class.R'
        'filter_by_name_class.R' 'filter_na_count.R'
        'filter_smeta_class.R' 'fisher_exact_class.R'
        'fold_change_class.R' 'fold_change_int_class.R'
        'forward_selection_by_rank_class.R' 'ggplot_theme_pub.R'
        'glog_class.R' 'grid_search_1d_class.R' 'hca_class.R'
        'kfold_xval_class.R' 'kfold_xval_charts.R' 'knn_impute_class.R'
        'kw_rank_sum_class.R' 'linear_model_class.R' 'log_transform.R'
        'mean_centre_class.R' 'model_apply_doc.R' 'model_predict_doc.R'
        'model_reverse_doc.R' 'model_train_doc.R'
        'mv_feature_filter_class.R' 'mv_sample_filter_class.R'
        'nroot_transform_class.R' 'pairs_filter_class.R'
        'paretoscale_class.R' 'permutation_test_class.R'
        'permute_sample_order_class.R' 'pqn_norm_method_class.R'
        'prop_na_class.R' 'r_squared_class.R' 'rsd_filter.R'
        'run_doc.R' 'sb_corr.R' 'split_data_class.R'
        'stratified_split_class.R' 'structToolbox.R'
        'svm_classifier_class.R' 'tSNE_class.R' 'ttest_class.R'
        'vec_norm_class.R' 'wilcox_test_class.R' 'zzz.R'
Depends: R (>= 4.0), struct (>= 0.99.7)
Imports: ggplot2, ggthemes, grid, gridExtra, methods, scales, sp, stats
RoxygenNote: 7.1.0
Suggests: agricolae, BiocStyle, car, covr, cowplot, e1071, emmeans,
        ggdendro, knitr, magick, nlme, openxlsx, pls, pmp, reshape2,
        ropls, rmarkdown, Rtsne, testthat
VignetteBuilder: knitr
biocViews: WorkflowStep
git_url: https://git.bioconductor.org/packages/structToolbox
git_branch: master
git_last_commit: 6daf6f4
git_last_commit_date: 2020-04-07
Date/Publication: 2020-04-07
NeedsCompilation: no
Packaged: 2020-04-08 07:45:38 UTC; biocbuild
Built: R 4.0.0; ; 2020-04-08 17:28:44 UTC; windows
