kersplatSimCounts {splatter} | R Documentation

## Simulate Kersplat final counts

### Description

Simulate the final counts matrix for a Kersplat simulation

### Usage

    kersplatSimCounts(sim, params, verbose)

### Arguments

`sim` | SingleCellExperiment containing simulation.
`params` | KersplatParams object with simulation parameters.
`verbose` | logical. Whether to print progress messages

### Details

The cell counts matrix and ambient counts matrix are added together. The result is then downsampled to the cell library size (for cells and doublets) or the ambient library size (for empty cells) using the `downsampleMatrix` function.

### Value

SingleCellExperiment with counts matrix

### See Also

`downsampleMatrix`

[Package splatter version 1.11.4 Index]