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| .zs | .zs |
| chDir | chDir |
| close | closeAll |
| closeAll | closeAll |
| closeAll-method | closeAll |
| clue | clue |
| clue-method | clue |
| clueCount | clueCount |
| clueCount-method | clueCount |
| clueInstances | clueInstances |
| clueInstances-method | clueInstances |
| clueVehicle | clueVehicle |
| clueVehicle-method | clueVehicle |
| coerce | as("Slinky", "SummarizedExperiment") |
| coerce-method | as("Slinky", "SummarizedExperiment") |
| colnames | colnames |
| colnames-method | colnames |
| controls | controls #' Fetch the same plate control samples applicable for given ids (distil_id). Expects that the specified ids have pert_type of trt_sh or trt_cp. |
| controls-method | controls #' Fetch the same plate control samples applicable for given ids (distil_id). Expects that the specified ids have pert_type of trt_sh or trt_cp. |
| diffexp | diffexp |
| diffexp-method | diffexp |
| download | download |
| download-method | download |
| get_metadata | get_metadata |
| get_metadata-method | get_metadata |
| ks | ks |
| loadL1K | loadL1K |
| loadL1K-method | loadL1K |
| metadata | metadata |
| metadata-method | metadata |
| ncol | Slinky object dimensions |
| ncol-method | Slinky object dimensions |
| nrow | Slinky object dimensions |
| nrow-method | Slinky object dimensions |
| readGCTX | readGCTX |
| readGCTX-method | readGCTX |
| rownames | rownames |
| rownames-method | rownames |
| rzs | rzs |
| rzs-method | rzs |
| Slinky | An S4 class for working with LINCS data |
| Slinky-class | An S4 class for working with LINCS data |
| [-method | Subsetting Slinky objects |