An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps

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Documentation for package ‘seqplots’ version 1.25.0

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seqplots-package SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.
add_local_file Add files to local SeqPlots installation
getPlotSetArray Process genomic signal
getREF Get reference genome
import.narrowPeak Import function for narrowPeak format
MotifSetup MotifSetup Reference Class
MotifSetup-class MotifSetup Reference Class
plot Generic plot function for SeqPlots package calsses
plot-method Generic plot function for SeqPlots package calsses
plotAverage Create the average plot
plotAverage-method Create the average plot
plotHeatmap Plot heatmap with optional clustering
plotHeatmap-method Plot heatmap with optional clustering
PlotSetArray PlotSetArray Reference Class
PlotSetArray-class PlotSetArray Reference Class
PlotSetList PlotSetList Reference Class
PlotSetList-class PlotSetList Reference Class
PlotSetPair PlotSetPair Reference Class
PlotSetPair-class PlotSetPair Reference Class
run SeqPlots innitiation
seqplots SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.
seqplots-generic SeqPlots generic methods
[-method SeqPlots generic methods
[[-method SeqPlots generic methods