calcTGIF {scTGIF} | R Documentation

## Function for connecting cellular patterns and functional patterns using jNMF

### Description

`calcTGIF` function calculates what kind of cellular patterns and functional patterns are contained in single-cell RNA-seq data and `reportTGIF` function generates report of analytic result.

### Usage

    calcTGIF(sce, rank)

### Arguments

`sce` | A object generated by instantization of SingleCellExperiment-class.
`rank` | Rank parameter of joint NMF algorithm.

### Value

The result is saved to metadata slot of SingleCellExperiment object.

### Author(s)

NA

### Examples

    showMethods("calcTGIF")

[Package scTGIF version 1.1.0 Index]