f2197fba1e4de84ba27c7aa43c4966a3 *CITATION
0d97a7dcb17b687b169fa0aa7edf07f7 *DESCRIPTION
06e33caa0827cb8be3b19dde72f3b115 *INDEX
d9969bd50915ba5bda9d1a18e2d00c14 *Meta/Rd.rds
54ac0c29304ac573070d09247e7e6382 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
dc7bc980446432d35a7565aa5ec37a3e *Meta/hsearch.rds
50d4ccf432efcd330d9515f786b3876d *Meta/links.rds
c93fde63d78dbd4561217dee5de4e6af *Meta/nsInfo.rds
60f8a11cd456fe2de0a7f1ddba2b3f77 *Meta/package.rds
ccbed1524b53fed8e492dda8f5a3b2e3 *Meta/vignette.rds
3c58e51ed31e3e39e329547d0de938fe *NAMESPACE
44ae129a9f93f36c44c550c510554cd2 *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/scPipe
72dd94a4c37796c61310c3aa4d92945e *R/scPipe.rdb
db9eecaf5109ad1b30f0d4312e15c242 *R/scPipe.rdx
1dc17379efee0dc44aee270095903ff5 *data/sc_sample_data.RData
2594a9728f0d35790ec31657b0f9c880 *data/sc_sample_qc.RData
d2ef606b4d80afde2dcc99daa120f8cd *doc/index.html
84352518295714a7df14e8c578552fb4 *doc/scPipe_tutorial.R
32774cd76c26cd7e96192c28b9e647af *doc/scPipe_tutorial.Rmd
4106fa50698e4f1c6638211f459a6767 *doc/scPipe_tutorial.html
339e0225f3294bf2bf89ac33d71a73c2 *extdata/ERCC92.fa
6e4cb84dc35b55f6c26e244c3d518583 *extdata/ERCC92_anno.gff3
e6007becb38885068ee4c1569f11676c *extdata/barcode_anno.csv
8577e8f76719bf43c33a7f7db593ef83 *extdata/ens_tiny_anno.gff3.gz
95dcee5780eae0513826393d7731faf6 *extdata/ens_tiny_anno.gtf.gz
4b69e9071aaebe7e0f0b72faba999836 *extdata/ensembl_hg38_chrY.gtf.gz
2775eff980dad9481fe7170ef11b3b29 *extdata/ensembl_y_tiny.gtf.gz
1ec5e129ea424597706f4b625327c69b *extdata/gen_tiny_anno.gff3.gz
84f6ae29496eb56652f373b91bfef183 *extdata/gen_tiny_anno.gtf.gz
220922b0d0b25aa599770ca139e2d2e1 *extdata/ref_tiny_anno.gff3.gz
14fb7c015fbeae5a49a06a3447bd864c *extdata/report_template.Rmd
60ecd0d30f4bb5aee8a052a6051d2e1c *extdata/report_template_slim.Rmd
4f72dbb833c45e8d9417b4bc3a0b4716 *extdata/simu_R1.fastq.gz
6b555e64cd9a0e3dbe416284e857fae2 *extdata/simu_R2.fastq.gz
ed4dd019106f776802703cc17ca2ba4d *help/AnIndex
a312326ae8628097a8702eb872123d01 *help/aliases.rds
d4ce6240c9c5a05547f8783217b36102 *help/paths.rds
ee24e2dcb9f83ff4b282821624acf8cc *help/scPipe.rdb
e394669aba95f9f0328ddcbc2feb1abe *help/scPipe.rdx
b0ec4ae7a8d48ee7d86ec2c5d8343054 *html/00Index.html
fdcdd2614ea2e1cdc23283fa1595cad3 *html/QC_metrics.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
6c2e206d84f601493292044c623afabc *html/UMI_dup_info.html
429550a39aca95a6f5a092a0b4c066b1 *html/UMI_duplication.html
75549d8825785a3482998bcb7a8c56d8 *html/anno_import.html
e39e2355f311a219010152acc386f73f *html/anno_to_saf.html
6e9ff8edeb0f71c34b4147946736e82a *html/calculate_QC_metrics.html
ed38ff747168e067a93253bcd15e6fa7 *html/cell_barcode_matching.html
308a41c0138e3d86f3326706e4de9c03 *html/convert_geneid.html
caf8215c58ee9cb5abef9ed8387f9e90 *html/create_processed_report.html
c0e064483b7945873aa4b576c9578156 *html/create_report.html
17fd7583664333593febd44cd17f375f *html/create_sce_by_dir.html
5fd011d61e33f74f104b6855cf2f339b *html/demultiplex_info.html
6c7d04f97d085cfa0d97c787510ac303 *html/detect_outlier.html
3be25ff5047805a80388b1730475d264 *html/gene_id_type.html
14d895cb58b638b4da068506b0c8f5cc *html/get_ercc_anno.html
b9f423cf17795162309924ec4def902a *html/get_genes_by_GO.html
2a6daa02945b34eb27f9d4eb959f06e7 *html/get_read_str.html
5b07e253148ab4038d2559b11fec68b5 *html/organism.html
cf28a43c91d98a19e70c8562becc6820 *html/plot_QC_pairs.html
c075f76d7efbe860e94df523c956159d *html/plot_UMI_dup.html
6e26399f1fade4a4a3004c290719c415 *html/plot_demultiplex.html
74bd050d8273aa8cad5fd0a0a6c9623b *html/plot_mapping.html
815b6da6787a66394abbb80f0e531448 *html/remove_outliers.html
30bd6b1aeb152a170f9e5bb6fab86080 *html/scPipe.html
a5dce0d8c32012e3721e1c7dc03ea99e *html/sc_correct_bam_bc.html
c983ec6cdd8c58334a9376408fdab977 *html/sc_count_aligned_bam.html
3cc04741f1bf175040baec199ad82533 *html/sc_demultiplex.html
59d66a967cfa599eee1fa7e603ed2a3e *html/sc_demultiplex_and_count.html
f5b86e07cfdefc999cec28a56d581d94 *html/sc_detect_bc.html
063d576779acb9ebdd485bc51063cbe9 *html/sc_exon_mapping.html
8e05d552cd75b9d378e430b0a73f260d *html/sc_gene_counting.html
af5dd5e935aae2e28f7646b750a520a3 *html/sc_sample_data.html
63ce26ee0fd4a76f4c61b39a44848bb3 *html/sc_sample_qc.html
08ca35327ee2a2ab537d6c1780977b14 *html/sc_trim_barcode.html
0c3e3ab702a713e5717265eac5065f67 *libs/i386/scPipe.dll
3cf019e46bee13a706edbb10546382f5 *libs/x64/scPipe.dll
e17bcd270318aaaabf8568c328e3d59c *scPipe.png
a4e7b825ee1d624e008b5bcb4659e78d *workflow.png
