R: Read in an SBML file (start here)

SBML import {rsbml}

R Documentation

Read in an SBML file (start here)

Description

Read an SBML file into R.

Usage

rsbml_read(filename, text, dom = TRUE, strict = FALSE, schema = FALSE,
                  consistency = TRUE)

Arguments

`filename`	the name of the SBML file to parse
`text`	a string of SBML text to parse (instead of file)
`dom`	whether to convert directly to the S4 DOM (`TRUE`, the default) or leave as the internal `SBMLDocument`.
`strict`	whether to report warnings in addition to errors or not (`FALSE`, the default).
`schema`	whether to perform XML schema validation
`consistency`	whether to perform consistency checks; recommended but might cause performance deficiencies.

Value

a SBML object, or a SBMLDocument if dom is FALSE.

Author(s)

Michael Lawrence

Examples

  # Read an SBML file
  file <- system.file("sbml", "GlycolysisLayout.xml", package = "rsbml")
  doc <- rsbml_read(file)
  
  # Read an SBML string
  string <- paste(readLines(file),collapse="\n")
  doc <- rsbml_read(text = string)

[Package rsbml version 2.45.0 Index]