buildAnnotationStore	buildAnnotationStore
calcCoverage	calcCoverage
coverageRef	coverageRef
coverageRnaRef	coverageRnaRef
getAnnotation	getAnnotation
getBiotypes	getBiotypes
getr	simpleGetSet
kmeansDesign	kmeansDesign
mergeRuns	mergeRuns
preprocessRanges	preprocessRanges
profileMatrix	profileMatrix
recoup	recoup
recoup-deprecated	recoup-deprecated
recoupCorrelation	recoupCorrelation
recoupHeatmap	recoupHeatmap
recoupPlot	recoupPlot
recoupProfile	recoupProfile
recoup_test_data	recoup_test_data
removeData	removeData
rpMatrix	rpMatrix
setr	simpleGetSet
sliceObj	sliceObj
test.design	recoup_test_data
test.exons	recoup_test_data
test.genome	recoup_test_data
test.input	recoup_test_data
