ae075240be742c0969aad9c94e6a5e31 *CITATION
c9d27b3ee43c06ba4d7626768c51eee1 *DESCRIPTION
83e32a02102bd5db99b1abe76e72e452 *INDEX
f3d8c7f7a60b989da2317b528c847bed *Meta/Rd.rds
85aed2a03d09ef2c02de01e3c88b5de4 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
9b65d5896aaf4f19511d8afdcdd74c97 *Meta/hsearch.rds
d32989d3173d9f7747374157bfc25611 *Meta/links.rds
4cf0032180cdd33a97aa3d34b06955ae *Meta/nsInfo.rds
1af9ee1774e755d012621e37f3518eaf *Meta/package.rds
77915cbbecdb977188691d69f8dfcfcb *Meta/vignette.rds
e252bd722268a57cd6ebc4065b35b52b *NAMESPACE
88799e12a0bcb0bfc36b476bcb5951ad *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/rTRM
73011286bf6517536d6fdbef626dd8a6 *R/rTRM.rdb
141d2a80dda9279743237ff7b042b51d *R/rTRM.rdx
39cf1ac4f3cf9c8cc4705db309db9578 *data/biogrid_hs.rda
ad0a8c78b1877871d539d9de7f700ea3 *data/biogrid_mm.rda
f246fde7976b255f72367afee71bf9d9 *data/datalist
2bd1f5b9fc49bd5ba9911be8dd79973a *db/database.db
3c90d8c315cde66b14a4f346f33a7a85 *doc/index.html
c8315ed8a0930da62df1f875d02c3118 *doc/rTRM_Introduction.R
10e871217ea32f1b3b025655c7337042 *doc/rTRM_Introduction.Rnw
9df747bf4a267d46aeb7b1457b105ede *doc/rTRM_Introduction.pdf
98b9ba03259ae6d5fc4516e7a658a10a *extra/ESC-expressed.txt
f658dbb8940b92bfdafc3dcf2cdb698f *extra/ESC_Sox2_peaks.txt
fbb496fd5991c64b1437c46008ae2c4a *extra/example.rda
ef10b0ee264bece1a4bc5de1d57d5102 *extra/pwm_mm_logn.rda
437a3b466c73481572d3acda987eacef *extra/sox2_enr.rda
8bf034224b0f19bbbb6cb98c90e979af *extra/sox2_motif_list.rda
380492bb98fe9ecd48241bc9ab42771c *extra/test.R
4fd5f8a7026274a26f8077d8a56011be *help/AnIndex
262da579af0534ebfea4e83ded6bb8da *help/aliases.rds
bf19aca91885623e49c6086a4a4c999b *help/paths.rds
79dabbb1adb766454b0a90e6b1b700c9 *help/rTRM.rdb
d71ddc3b4dc8926cd094d8df7a8293ec *help/rTRM.rdx
54576ae6f3b0f745c896762608c54a6d *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
1821b5fbd83bbdda6a5ecf13c6017c1e *html/annotateFreq.html
7ce1da852c707fa25b18c6746f3dd40f *html/annotateModule.html
806d5c4806869d50bbad0ea838924c80 *html/annotateTRM.html
82713b8bc61a8d5df9069992594aef05 *html/biogrid_hs.html
12a87c9bb1288dae7d54a6258b4922c1 *html/biogrid_mm.html
fd5bc7005d163483401ea694adbfbdbe *html/findTRM.html
f73e6c11128d2a7f0cbc7844680d430d *html/getAnnotations.html
b988b3feb3bb85da07c9e3b1d6dd4359 *html/getBiogridData.html
e3fe94950b793272288623361e778336 *html/getConcentricList.html
e805a2bf3f74f3806cf3f2e6d3b05e3a *html/getLargestComp.html
ee9f543223eb1681822aebd7262aa8e5 *html/getMaps.html
499db6ce8ae189eabd62d0edf1b26967 *html/getMatrices.html
445e1ceed67d6a2de8bd71bd74b6a2a3 *html/getMotifsFromEntrezgene.html
80ce63aed64e28e1942d289229ffc3cf *html/getMotifsFromSymbol.html
9b8a47bfc445f9fb774f0e273e242315 *html/getOrthologFromMatrix.html
be369368cbadb0a7fc6b4436c62a0a51 *html/getOrthologs.html
1d58341dedca529741bebc76e1451d8a *html/getOrthologsFromBiomart.html
007869fa56e1e4cfbb86fe87e22781cf *html/getSequencesFromGenome.html
962d3828739d6fd79efba2e6ac129e7f *html/getSimilarityMatrix.html
9eb66d38722ed7818b02d9515b6f2d7c *html/getTFclass.html
7f54a26a4c1c34d94e1ffb3332faf336 *html/getTFclassFromEntrezgene.html
c059e1dd05fb68d3793812fa90ec10f3 *html/getTFterms.html
7faaf408113674420a06911b46b47c77 *html/initBiomart.html
21c181790c5b7e403419c69d9ae51e5c *html/layout.arc.html
5818487fd55f40b39ea1178e4469e996 *html/layout.concentric.html
a22f9cebd62b618797ceefcc2c891c9a *html/plotDegree.html
10521e9fc51ef9011ae15625987742e4 *html/plotGraph.html
4fb53c68e3e7e8e10ddd52632ff2feb9 *html/plotTRM.html
026df48a0b541cb7463266c3a841a19b *html/plotTRMlegend.html
495ec5719707d55216da42a8e3c9ce0e *html/processBiogrid.html
b84fb6b313b5587dd83c9e7e2cca5025 *html/rTRM-package.html
7d75a5db2bc5617c1a8abdeff899c16e *html/removeVertices.html
cf2cebe2a3e59c7a7af1602119168453 *html/writeTRMreport.html
f41c2ce67d4c05dd947ee755befef8e9 *unitTests/test_findTRM.R
