Class "gadem"

Description

This object contains all gadem output information.

Objects from the Class

Objects can be created by calls of the form new("gadem", ...).

Slots

motifList

List of input PWM.

parameters

List of rGADEM parameters.

Methods

[

signature(x = "gadem"): subset gadem object.

[[

signature(x = "gadem"): subset gadem object.

nMotifs

signature(x = "gadem"): Number of motifs identified

names

signature(x = "gadem"): Assign motifs names.

dim

signature(x = "gadem"): Number of sequences identified for each motifs.

consensus

signature(x = "gadem"):Sequence of consensus motifs.

nOccurrences

signature(x = "gadem"):View of PWMs.

plot, gadem-method

signature(x = "gadem"):Plot.

startPos

signature(x = "gadem"):Start position for each sequences.

endPos

signature(x = "gadem"):End position for each sequences.

getPWM

signature(x = "gadem"):End position for each sequences.

Author(s)

Arnaud Droit arnaud.droit@crchuq.ulaval.ca

See Also

motif , align, parameters

Examples

showClass("gadem")