52b39726207d688fda2d246f93c8ddf2 *DESCRIPTION
b57f1f87aaa983fa238ab1a4c1216bf7 *INDEX
684d18c6ba5cac6bf0e08466882daa94 *Meta/Rd.rds
5777b4db8537c1e5abf5be31ce03981a *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
b3edd482771e3ef4df7b0a2bcf394408 *Meta/hsearch.rds
97cfecf377d889a6020506acbb27e1ad *Meta/links.rds
a481d6fd31d8e7fe73f39780d4bc0fc8 *Meta/nsInfo.rds
92bb9a78090ae9257a5dc3d7044e3d78 *Meta/package.rds
b2aafabe6ced42d94d2a426eff296bcf *NAMESPACE
594c0d4f02b79551b089be17d3c83296 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/pwOmics
54c5da010835825e3aa0bf82e5fffd53 *R/pwOmics.rdb
fadade769e2cb57ca590ac950426bda2 *R/pwOmics.rdx
62f1951990e4a48b8e9576a63de2a20d *data/OmicsExampleData.RData
0173a6340a384e4863487ec72a92f25c *extdata/Genelists/Genelist_biocarta.RData
8ce73f94923b113e1b37341189cc1fa5 *extdata/Genelists/Genelist_kegg.RData
3966ca5db8518cdf31378969a73c53e7 *extdata/Genelists/Genelist_nci.RData
9f57a879f9965936a1ae43478a963a13 *extdata/Genelists/Genelist_reactome.RData
8212a0c9e1ddcbd8edbc9037b606eca5 *extdata/TF_targets.txt
98b206046ac2e5a7723f5b450b628003 *extdata/chea-background.csv
e179e6d1de61e0f377aef5c587e79401 *extdata/mat_phospho.csv
cbff0dfb526df4226b5903b7443c06f6 *extdata/phospho_anno.txt
1bfd415c150f248004e280346bdcd2fc *extdata/phospho_reg_table.txt
52bfb1275c60a7e2e3b2bbbb1bb348fd *extdata/transcriptome_signif.txt
c0a168a7153f25de41757b7fd6b64472 *help/AnIndex
c2f66cafa13bc4dfc26c9e22ffcdb3ee *help/aliases.rds
5ef9b5a3997202a545a1181b0f624a13 *help/paths.rds
37e055d131ca052924ec4123561473be *help/pwOmics.rdb
6f4f139263ed634e1f157bd72d5781e3 *help/pwOmics.rdx
ba6622ff343187b903e900bd6b8736af *html/00Index.html
a9a246e9d13e8be1ae6edcdb0e0eb427 *html/OmicsExampleData.html
d5cb8922787aec724b80e57ff03c5122 *html/PWidentallprots.html
76bf878900e6d6536d22309b586a60b9 *html/PWidentallprotssub.html
7c694b99ae147ada21e3a09def0e9ebb *html/PWidenttps.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
018405d814299fbfd08dbb5e5ca3aaf7 *html/SteinerTree_cons.html
cbf5b52b4401484d67d4ee36b9de0115 *html/TFidentallgenes.html
2e2777c6137a79bf20fd9515df48a1cb *html/TFidenttps.html
d07598c84e5c84d4cd1621eaf5175ff4 *html/addFeedbackLoops.html
6c8add6b43670fc7b8fed5817e236879 *html/clusterTimeProfiles.html
9353591b13af19f99f665ec66b1c347d *html/consDynamicNet.html
a92b55528dc4aa3277fa25b8539bc31e *html/createBiopaxnew.html
ca85d081f71504f1efe49e5ed5927f79 *html/createIntIDs.html
160dabb05318f9cf43d5f9f97cd87df2 *html/findSignalingAxes.html
3f6b27a6d3e284a8b7a165e489eec918 *html/findxneighborsoverlap.html
1da94929e09c742c72b3f1ed713ad5c0 *html/findxnextneighbors.html
bfeb14d63d2e94e789f940e1bc825b04 *html/genGenelists.html
56c51a4dae2757bc23035db120d869f4 *html/genGenelistssub.html
de678ff22b6b703e8c6c39f1fdabad42 *html/genIntIDs.html
38d606fd47c1d863c87f445c8d97f7e7 *html/generate_DSSignalingBase.html
9c7e54a9a6a085874c3f0a2763679a5d *html/genfullConsensusGraph.html
7967588c8b0fe447086c859963144836 *html/getAlias_Ensemble.html
da22766465ae77b39d1024d84cc380aa *html/getAliasfromSTRINGIDs.html
c2d3ab444562ad7e45938613629c5e0e *html/getBiopaxModel.html
910e94ceb8fafde522d9a7f052408003 *html/getConsensusSTRINGIDs.html
cd07f9060bc64cab97ee42a4aedc07b0 *html/getDS_PWs.html
e90b3969402553f76e9a6564de0ef834 *html/getDS_TFs.html
0084445439cab94e676b781e8aceb759 *html/getDS_TGs.html
541c5e5245c50f99bfbe1c8c7afc286f *html/getFCsplines.html
282992738e107788209c01d61a4519b3 *html/getGenesIntersection.html
b321371e7f7a8feb43a51b9f0538e317 *html/getOmicsDataset.html
21ba388c260f7d470192c0dc459ad73f *html/getOmicsTimepoints.html
55183931f5b115956f778aa97eae54da *html/getOmicsallGeneIDs.html
971be35a7a8adc8717c08d9f385a491f *html/getOmicsallProteinIDs.html
631e29bf194186aa5d3027883f2e5faa *html/getProteinIntersection.html
4a02bbde3590fc0e11caf0de01a8cde4 *html/getSTRING_graph.html
6c3ed976acf1f25381599933f85752a5 *html/getTFIntersection.html
f790f5b852e524fa2025bb58c367c9b6 *html/getUS_PWs.html
b5220ba5327a7bf84d9cb54a8244f9b2 *html/getUS_TFs.html
bb5f12edaa9b495eaec50a0a87f74df9 *html/getUS_regulators.html
4c00022d046ed8dbc874be7044f91f64 *html/get_matching_transcripts.html
72413fe1a9de9820352d79e255318497 *html/getbipartitegraphInfo.html
eb02c99a2aa64e7a5e91cc90976e9394 *html/gettpIntersection.html
670e1831346821398b5c305c3f64d9df *html/identPWsofTFs.html
8821cb23f448dd63e9b8ac9bdee3771a *html/identRegulators.html
fc8ec61b1887914a5d55295ebd6acb31 *html/identTFTGsinPWs.html
87718a3c7ab1626e6b56bc30e061f52e *html/identTFs.html
61b5ecf4945050355010a93447e2913c *html/identifyPR.html
7e9d507f495c5fb6800387006197e4dc *html/identifyPWTFTGs.html
a41d8617cf520dc4a6e534e2c4d176a0 *html/identifyPWs.html
57e68153015a27a703523df8b77f08ad *html/identifyRsofTFs.html
f83730f2e99b6d925fc5b686032aa939 *html/identifyTFs.html
c8e705cb5692846fac342ab1a6c21034 *html/infoConsensusGraph.html
3bb1664489c3633e5410fee671b8e94d *html/loadGenelists.html
fc2a2ed461204449aa0223d1255be101 *html/loadPWs.html
d76c903b78357f752e1c6690157bc1b1 *html/plotConsDynNet.html
c897f42c5a98ed93e2b705698ed47709 *html/plotConsensusGraph.html
89abd20942e878f3a9d34b942cfe0306 *html/plotConsensusProfiles.html
91dbbf26664e85749334c1c9686e9175 *html/plotTimeProfileClusters.html
dcd5d32ffaba04c6f602d03e061ff966 *html/predictFCvals.html
c85b8ccdf643fde1b892edf94998954b *html/preparePWinfo.html
9479f70440e478e23eafec0ed923b90a *html/print.OmicsData.html
ab91ce5c1c327c21bab3879dfa039555 *html/pwIntOmics-package.html
58d0a6f1f5845648da07d829b7d25b2e *html/readOmics.html
bebdf1c3a573fa07c8be4b352733977a *html/readPWdata.html
6fee3c18a8ccc683e5118f9aaef04f37 *html/readPhosphodata.html
0a87926554953ec90770c0cb1305115d *html/readTFdata.html
9f6115fa7488d8b3d208ca61ecab4150 *html/readTFtargets.html
89c5c07b52d03ccc0a2ab7329d38dab9 *html/selectPWsofTFs.html
1a95409eded1745979a4240e5c24cc26 *html/staticConsensusNet.html
83c9bbe3847d0d014d029c2161a9517e *html/temp_correlations.html
122cc06fcca219f21a1377b9d567c51e *unitTests/provided_TF_genes.txt
ecdaa851b286ef5c57d39631fabf5bcb *unitTests/pwIntOmics_exported.R
fe0a87544ccf51eb8843918e086046c7 *unitTests/pwIntOmics_internal.R
