Pathway RespOnsive GENes for activity inference from gene expression

Documentation for package ‘progeny’ version 1.9.6

getModel	Returns the Progeny Model
model_human_full	The full human linear model underlying PROGENy
model_mouse_full	The full mouse linear model underlying PROGENy
progeny	Calculate PROGENy pathway scores from gene expression
progenyPerm	This function is designed to compute progeny pathway scores and assesses their significance using a gene sampling-based permutation strategy, for a series of experimental samples/contrasts.
progenyScatter	Calculate Progeny Scores with Permutations
saveProgenyPlots	Function to save Progeny plots