Package: progeny
Title: Pathway RespOnsive GENes for activity inference from gene
        expression
Version: 1.9.6
Author: Michael Schubert <mschu.dev@gmail.com>,
	 Igor Bulanov,
	 Alberto Valdeolivas,	
	 Christian Holland
Maintainer: Alberto Valdeolivas <alvaldeolivas@gmail.com>
Description: This package provides a function to infer pathway activity
    from gene expression using PROGENy. It contains the linear model we
    inferred in the publication "Perturbation-response genes reveal signaling
    footprints in cancer gene expression".
URL: https://github.com/saezlab/progeny
BugReports: https://github.com/saezlab/progeny/issues
Depends: R (>= 3.6.0)
Imports: Biobase, stats, dplyr, tidyr, ggplot2, ggrepel, gridExtra
biocViews: SystemsBiology, GeneExpression, FunctionalPrediction,
        GeneRegulation
License: Apache License (== 2.0) | file LICENSE
LazyData: true
Encoding: UTF-8
Suggests: airway, biomaRt, BiocFileCache, broom, Seurat,
        SingleCellExperiment, DESeq2, knitr, readr, readxl, pheatmap,
        tibble, testthat (>= 2.1.0)
VignetteBuilder: knitr
RoxygenNote: 7.0.2
git_url: https://git.bioconductor.org/packages/progeny
git_branch: master
git_last_commit: 3232882
git_last_commit_date: 2020-04-08
Date/Publication: 2020-04-08
NeedsCompilation: no
Packaged: 2020-04-09 06:31:26 UTC; biocbuild
Built: R 4.0.0; ; 2020-04-09 17:17:38 UTC; windows
