5d1480a1ed87589765e31fc39bdc60d2 *CITATION
a412ab36d24df4d2c12d2a6f5fadeba7 *DESCRIPTION
d6d035437b092152c4111cec704b8c10 *INDEX
32c452f3ff7f892049c964ae956bd400 *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
941b34065334ff5583a8f234a345b2ea *Meta/hsearch.rds
fcd94757040dbb31a8f397902545be7a *Meta/links.rds
95a798cc4762a658280bf44c249b57b4 *Meta/nsInfo.rds
27649cf38a0d0595594d3e2e0407ba0c *Meta/package.rds
a98836d15ccea4144d2f1dcaa7640ff3 *Meta/vignette.rds
296eb705157250cdfc0e975416e60e13 *NAMESPACE
ad2526eb4d4bcabb6fc4b978e146d97a *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/paxtoolsr
cfb9dc7e1403a443a9a630f49a4b1a3a *R/paxtoolsr.rdb
8fdf8c2e0d36124aefa244d749a26274 *R/paxtoolsr.rdx
6d04e35e1764075bf908f2d025c220e4 *doc/index.html
e195539d6d2e01468da38522128eef89 *doc/using_paxtoolsr.R
15ac305c62f0b5ac05d2bdd02bb4ae8f *doc/using_paxtoolsr.Rmd
b5b5bdbe28a85116ddbc63031281e795 *doc/using_paxtoolsr.html
57094ba294cbb6fd68b5e557da2bad9b *extdata/10523676-compact.xml
54ab0ba22a9a4c822d8e575990c07331 *extdata/REACT_12034-3.owl
befab228b4b455dad710c9e1580e3fb1 *extdata/biopax3-short-metabolic-pathway.owl
2b5dfeb2ea9bfec99bd6dc4aba646b89 *extdata/dna_replication.owl
0023a3039a2f2658bb8c7885077cbbd5 *extdata/pathways.txt.gz
5a160fa41a75c7c756c2f727535d9d08 *extdata/raf_map_kinase_cascade_reactome.owl
d9802077f40d32d53da69dbbc116d215 *extdata/sif_color_code.txt
7ee52a8e1359ac99e0638777b1e0039e *extdata/tca_cycle.sif
584a03e3df7add5d446aa75e13fd94bf *extdata/test_PathwayCommons12.kegg.hgnc.gmt
8f438be882cf91b769b8ec2bbf4966e3 *extdata/test_PathwayCommons12.netpath.hgnc.gmt
befab228b4b455dad710c9e1580e3fb1 *extdata/test_biopax.owl
360e4ae65db08fb3a419806d3947666b *extdata/test_edgelist.txt
720f4a025c3d8906980885ca1ab33f8b *extdata/test_gsea.gmt
c93c59f7bd8a7d4aafcee2da89ace6f5 *extdata/test_gsea_1.gmt
01d9c9d6de8696250b58d6181392250e *extdata/test_sbgn.xml
7ee52a8e1359ac99e0638777b1e0039e *extdata/test_sif.txt
55bd7efeea626b96b3f332fc3e58d89f *extdata/test_sif_shortestPath.txt
a91fd992f44498a410ba6fb4af7496d0 *extdata/test_sifnx.txt
d4a9f3016f63dd1bddb9cce026810563 *extdata/test_sifnx2.txt
3e2b04768807dcec38b24914ebe7640c *extdata/test_sifnx_250.txt
42d032414c1a6fdeea0fb9e1719d6b6f *extdata/test_sifnx_sm.txt
1751e8c85e38542c5a19cfe17de88522 *help/AnIndex
791d561d892e017b8b5237e1f5ad7220 *help/aliases.rds
74963912ee36f30866e8e0ce397fd27b *help/paths.rds
f73fcccae1b9b22b83b16fb26256b45e *help/paxtoolsr.rdb
51b55e1529077aede4970425c552b5b6 *help/paxtoolsr.rdx
71162993ea5b70193a3bd7b5b8512a5d *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
4ffb2575a216e5a9edf31f44e6150e94 *html/addAttributeList.html
b7e9f3b1899440f0fe097b3da4a67b8c *html/convertDataFrameListsToVectors.html
d7ceb610318f677700cf6145b48eae5d *html/convertSifToGmt.html
b605c7140caef978e0a0bf9663fb7ec6 *html/downloadFile.html
0cd9eea4a99a498c32587a5b8cdeac67 *html/downloadPc2.html
7c51ce7c52e12c7987dcba77401ae949 *html/downloadSignedPC.html
870108244b1016a5d2e2065727130242 *html/fetch.html
38cab0965252768c512b9fb19d359470 *html/filterSif.html
43765bd3d150f846638e2f9e87e307be *html/getCacheFiles.html
26f819f73069972452067554b4c6178e *html/getErrorMessage.html
ebd2062fe08b393364ccc195f2802148 *html/getNeighbors.html
540ef93c96519191a4a4e16e0dac211b *html/getPc.html
220aba89ec63014ec4bb51bec170b2dd *html/getPcDatabaseNames.html
c6d5da353255ce69005e274f9748dd21 *html/getPcUrl.html
e411f00a9fdc148f9b69741b33f937bd *html/getShortestPathSif.html
6cafc343a54578d4fe805b5086aac098 *html/getSifInteractionCategories.html
b2a782c9fd785c981ab3e0217a90fb13 *html/graphPc.html
ad6d091ee9dd549a3dcd802dba16cc42 *html/integrateBiopax.html
0a5734afee73678c7cd644eeb8699cb8 *html/loadSifInIgraph.html
7b6e543449b2f0d2fed2d0e1e9d2513f *html/mapAttributes.html
e5d71dc8d71b1aa0be7abf0267b162a0 *html/mapValues.html
f632afa94e761d6194cad569913c91e3 *html/mergeBiopax.html
f96bead08c5f9b7942d15b2df189d894 *html/pcDirections.html
6b2677a7ce66f936db99068e913dedea *html/pcFormats.html
57110a11351357b84662220cbaaa424d *html/pcGraphQueries.html
7e9edd80719756250e382f9685d84d46 *html/processPcRequest.html
50701980f61088dfede84256acbcc3c8 *html/readBiopax.html
66c2bd6ae1fea3fc9b8f404ffbb78019 *html/readGmt.html
71700f476cfc8b21004113a1ed10ce9d *html/readPcPathwaysInfo.html
0debf5130adb502d8b2bcf8555b3f186 *html/readSbgn.html
bb1d7439278e746525ac1c8b614f020e *html/readSif.html
3f6d6e9cebef3ae5ed4c638649256abe *html/readSifnx.html
e0ee95bbe24ec56d61556255a0895f1f *html/searchListOfVectors.html
674c01da13b28f00d0cc342f27dfefd6 *html/searchPc.html
8efa63ad681ef4396378a10e5be84a2b *html/splitSifnxByPathway.html
c3288589fa6dab4d18286dd20143faf3 *html/summarize.html
f4234877626db107f2e6cea7967da026 *html/summarizeSif.html
3e1e3f09fd387fcb79339821c938f4e3 *html/toCytoscape.html
f98b7dd4d207209ac23fdc1767764844 *html/toGSEA.html
5ee0cd06824756288f7e3def0e9f4795 *html/toLevel3.html
e1e43594dda7a5235be9f018adc75ff4 *html/toSBGN.html
eda2b6341423e9eb10c4c8e0dac0ee60 *html/toSif.html
b0cf8ec9ab5dee14e7df5ab061981a8d *html/toSifnx.html
2e6618e39e530db1e3f237e57a8a4c81 *html/topPathways.html
6c121de6a89d6c2c6dc3f9bd168e15cc *html/traverse.html
eb258fe1e21fd47918d3ab3fca532691 *html/validate.html
469d4a4267d7ecba44de6085eff76076 *ignore/convertIds.R
10b770f4bf107c3605328e762b505f57 *ignore/convertSifnxIds.R
ed2e681553db936079aa21796b1d0a89 *ignore/convertToDF.R
daaee6df65df384e7168e8c0577eceb5 *ignore/convertToDT.R
fb5b7f7caef5743309a18afbc9b3a2ad *ignore/convertToDataFrameWithListOfVectors.R
2aa64b9e72f77fb252234c525477376e *ignore/convertToPathwayList.R
33ea73ea94104e9e72ec060d2470d216 *ignore/del.txt
11a9c3f3e62bbb6f2385c98b78e3b469 *ignore/extractIds.R
0477d290cc88cb8983762f205f7f9ee0 *ignore/readSifnxSmall.R
7b853239982cd3f311b6bbb57e4fd28e *java/paxtools-4.3.1.jar
32810134c877218a48464ea8a46488eb *paxtoolsNotes.txt
