10aa55191cbc0781f06a35518262838e *CITATION
95ddf7faca260676e29a925d0953cf7a *DESCRIPTION
e7e92dce4a2267029be2b2f98599cc78 *INDEX
31b039293c720d8f6d419c42a83f8d2c *Meta/Rd.rds
ca4b1a999b2298db03d1c50f4f50e281 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
4a4c84e38b70dbe2338d752b98076c54 *Meta/hsearch.rds
65e7d51001af77e102993322fd5cbf17 *Meta/links.rds
db20c323f930b3a68f84d6bef249065e *Meta/nsInfo.rds
2e634d5e6136b87c52c84ce3778944b9 *Meta/package.rds
bdd0d50ca7fca29936dc75eae34a0e16 *Meta/vignette.rds
7afd566b141e0d4326feb9ec0988a6b4 *NAMESPACE
5630fc7f12b73341abd6200b389401ee *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/methylKit
c91d393b0d2195cb12bf3c4c617ed2fd *R/methylKit.rdb
bdb559d9f6289eb5e4151323c0bd480d *R/methylKit.rdx
a40ac0cf8d6f579994ec0d0e7e44b9bf *data/methylKit.RData
e3276ea257b41311a0c3d523aeb6a830 *doc/index.html
7713edb6326855ad1529d623e00bb22c *doc/methylKit.R
b1c43d152bff4beed59318420efb22c3 *doc/methylKit.Rmd
00e0bc6e9b8e108ab0aea9fc7037df2d *doc/methylKit.html
9f314284ccf1d954a2150d290362033c *extdata/control1.myCpG.txt
c2e87d0e9bf5274c687944cf4fc1b610 *extdata/control2.myCpG.txt
16bc04a2984590a5272c8c9895b6752e *extdata/cpgi.hg18.bed.txt
df0eb6952dc30be700238707958e73bd *extdata/ctrl.bismark_paired_end.sorted.bam
f8b1f2c63f34894df0596b93fd4cc980 *extdata/ctrl.bismark_paired_end.sorted.wh.sam
06ca43dca22648465f17c4f7ab1f6eb1 *extdata/ctrl1.txt.bgz
da59758faa641149dc936ccd1f7d517c *extdata/ctrl2.txt.bgz
e78640ae909e8d97b0fd81b8decfd97a *extdata/generic1.CpG.txt
f8c62c8a9102aee771305f2bc5ba526f *extdata/refseq.hg18.bed.txt
e45fad29dc4f1a3cbaa3a38209b248e0 *extdata/test.bismark_single_end.sorted.bam
069812356c00d6850567db5a6dfc4eb6 *extdata/test.bismark_single_end.sorted.wh.sam
f9a886656e88c673565abc8573ab7541 *extdata/test.fastq_bismark.sorted.min.sam
ed84e619d028dc221cb9b1d2dbe196cb *extdata/test.fastq_bismark.unsorted.min.sam
3fe084e1e464ba316df2a7e20258a87b *extdata/test.fastq_bismark.unsorted_chr.min.sam
320e8a27eb17f29cbd8e5e354265451a *extdata/test1.myCpG.txt
f84407c737c0ac0789cbdc6d15702104 *extdata/test1.txt.bgz
9ec00e7a201362efa9dd460e689e2f53 *extdata/test1_test2_ctrl1_ctrl2.txt.bgz
aa5e23946c668bae0377752e992e3f31 *extdata/test1_test2_ctrl1_ctrl2_diffMeth.txt.bgz
c4992c21174efc8df3129c70f9f65789 *extdata/test2.myCpG.txt
9a9db3f07bfeeac83a815dc02793208a *extdata/test2.txt.bgz
a7519e1628269275ac73b4bfde1150a1 *help/AnIndex
33ebcac86d7d6b311af7d31cfa979b68 *help/aliases.rds
a5fa9b0c58522e5b0efd451fcd267b3f *help/methylKit.rdb
4db33c5e32f244f56651fa3fe0fd4f49 *help/methylKit.rdx
9e83ada79efff97f08adcb91535741b5 *help/paths.rds
fe785ab34e3de47819cd4261c74a16b0 *html/00Index.html
16bdd7dd7f1634689172bd7b2f2f5677 *html/PCASamples-methods.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a4714f1db5c6691495355a4cea82d3e6 *html/adjustMethylC.html
cec9fc027aab8808f1495df21fa557bc *html/assocComp-methods.html
96a845a99fdd648b3e8fd96fa243d2f3 *html/bedgraph-methods.html
8222520738090c5a5f148e6605127e7b *html/calculateDiffMeth-methods.html
27dba7dfeb8092b631815d9e467e946d *html/calculateDiffMethDSS-methods.html
e11ff131bc1e78df5ca758e7c0e97d0d *html/clusterSamples-methods.html
2e3668ee8f5da8d5bf60186e01a8b04e *html/dataSim-methods.html
5194354fd01125691962154afe37176a *html/diffMethPerChr-methods.html
aac83d4427eede738ec1145e5c08467d *html/extract-methods.html
2c8dc9e9c50e0aa2bb0b4a001a810cd7 *html/filterByCoverage-methods.html
8b8b6066478753c21c0b5660b763769d *html/getAssembly-methods.html
aeb2b735716fc926bc4b83e6b5a7bcae *html/getContext-methods.html
dbd24798f484b3caa370029dbc7770f4 *html/getCorrelation-methods.html
dc4f0585680be187d4dc343b5bc83756 *html/getCoverageStats-methods.html
aa38c0dbe9b86c580ae4c5cff5fc8e1b *html/getDBPath-methods.html
d98846b19a0862bf0f30e897d2ea3970 *html/getData-methods.html
d69733ceb2d505a57a76f34f10d1ff6b *html/getMethylDiff-methods.html
59d037c57a13779491cf1f594a9963bb *html/getMethylationStats-methods.html
a39b9be21f1380f81f6edbe28b317345 *html/getSampleID-methods.html
2b58dc53ea280ce9e8cb2f47dba7b7bd *html/getTreatment-methods.html
b70d2065698b0a46bc3141f54dc6ab8a *html/joinSegmentNeighbours.html
23cb7b5bcfd93c3f904adbe0b80c786b *html/makeMethylDB-methods.html
f74673cd77c9eac969acdc01cee4c53d *html/methRead-methods.html
1206339a6a0a4420ff22903f139fd1f5 *html/methSeg.html
21e2e1b4d1fa028b2f7b06791025569a *html/methSeg2bed.html
1d7984ab9c416240550ae4d162d14894 *html/methylBase-class.html
3c3eda4274af0814d9c8e761ee140c54 *html/methylBase.obj.html
b2090b8b38eebb251e578d5abec86b5b *html/methylBaseDB-class.html
bbeee33e028c799bb50037cef52c94d7 *html/methylDiff-class.html
9c37dddd209b6f37e6edff8f696634f5 *html/methylDiff.obj.html
deb6b7e5be74bfd5fdd3e23f43d11215 *html/methylDiffDB-class.html
69fa84133db8bb8989c496924f7d7ac0 *html/methylKit-defunct.html
95bf42b199424e1bd57084f417f9156f *html/methylRaw-class.html
d47965fc99449670e6d3befb5ef63fa3 *html/methylRawDB-class.html
65dd22971565e97a6341af2a69d02870 *html/methylRawList-class.html
3fd2d6e29908b5a8683ae20ce490d425 *html/methylRawList.obj.html
6929de81108d52f934966f537b984615 *html/methylRawListDB-class.html
16da082ba3a89b72e4c9f7176140a9c9 *html/normalizeCoverage-methods.html
b4c98ea83777d0ef7380177de451f423 *html/percMethylation-methods.html
53e81d83dae161a58276a1c361b66398 *html/pool-methods.html
2f4f7b159f66a8f3ae8196931e9ddada *html/processBismarkAln-methods.html
dd495f105afd16e3ef2b639b2ea9d559 *html/readMethylDB-methods.html
b9b48e8d84561d78adabfb58962d811e *html/reconstruct-methods.html
161a40b56ec40693209528cdd5784ed3 *html/regionCounts.html
7f378fb760ee1e9db5d2da6ab9c38190 *html/removeComp-methods.html
18891d5731638895733eae03cd495f9d *html/reorganize-methods.html
985c78f28e648c1d9e2fef6e4bc27265 *html/select-methods.html
dd9ba7dc06334f863b78b818f18330d7 *html/selectByOverlap-methods.html
c587d6b5d5cba0ee80ab32f3ed33dddd *html/show-methods.html
e6fd7a35be34e00f1f7eff211ca80681 *html/tileMethylCounts-methods.html
bf2f067d4d919fad7a5fea12fa35b2b7 *html/unite-methods.html
d6dd080b7867cdb1cba82f41ce6a24cf *html/updateMethObject.html
b1d65fa6bd0374a0508b8b2aecba806c *libs/i386/methylKit.dll
6fd3d45bb124e275a0adf40704a233db *libs/x64/methylKit.dll
aef8d97d039ef8f54caea88566a96131 *methylKit_logo.png
301b30e38ac4850d4bef6fbe0f33522b *scripts/create.data.R
