| subset_methrix {methrix} | R Documentation |
methrix object based on given conditions.Subsets methrix object based on given conditions.
subset_methrix(m, regions = NULL, contigs = NULL, samples = NULL)
m |
|
regions |
genomic regions to subset by. Could be a data.table with 3 columns (chr, start, end) or a |
contigs |
chromosome names to subset by |
samples |
sample names to subset by |
Takes methrix object and filters CpGs based on coverage statistics
An object of class methrix
data('methrix_data')
#Subset to chromosome 1
subset_methrix(methrix_data, contigs = 'chr21')