| plot_coverage {methrix} | R Documentation |
Coverage QC Plots
plot_coverage(m, type = c("hist", "dens"), pheno = NULL,
perGroup = FALSE, lim = 100, size.lim = 1e+06,
col_palette = "RdYlGn")
m |
Input |
type |
Choose between 'hist' (histogram) or 'dens' (density plot). |
pheno |
Column name of colData(m). Will be used as a factor to color different groups in the plot. |
perGroup |
Color the plots in a sample-wise manner? |
lim |
Maximum coverage value to be plotted. |
size.lim |
The maximum number of observarions (sites*samples) to use. If the dataset is larger that this, random sites will be selected from the genome. |
col_palette |
Name of the RColorBrewer palette to use for plotting. |
ggplot2 object
data('methrix_data')
plot_coverage(m = methrix_data)