methrix_report {methrix}R Documentation

Creates a detailed interative html summary report from Methrix object

Description

Creates a detailed interative html summary report from Methrix object. If the directory contains required files (from previous run), it directly proceeds to generate html report.

Usage

methrix_report(meth, output_dir = NULL, recal_stats = FALSE,
  plot_beta_dist = TRUE, beta_nCpG = 10000, n_thr = 4)

Arguments

meth

methrix object

output_dir

Output directory name where the files should be saved. If NULL creats a tempdir

recal_stats

Whether summary statistics should be recalculated? If you are using subsetted methrix object set this to TRUE.

plot_beta_dist

Default TRUE. Can be time consuming.

beta_nCpG

Number of CpGs rto use for estimating beta value distribution. Default 10000

n_thr

Default 4. Only used if plot_beta_dist is TRUE

Value

an interactive html report

Examples

## Not run: 
data('methrix_data')
methrix::methrix_report(meth = methrix_data)

## End(Not run)
[Package methrix version 1.1.0 Index]