Summary statistics of MAF

Description

Summarizes genes and samples irrespective of the type of alteration. This is different from getSampleSummary and getGeneSummary which returns summaries of only non-synonymous variants.

Usage

mafSummary(maf)

Arguments

Details

This function takes MAF object as input and returns summary table.

Value

Returns a list of summarized tables

See Also

getGeneSummary getSampleSummary

Examples

laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
mafSummary(maf = laml)