3d202a338be106b1e75dfdf3c39e654a *DESCRIPTION
02d87f7e5c00da059abe10b27e259326 *INDEX
29a9012941a6bcb26bf0fb4382c5dd75 *LICENSE
5dc16e806f46537ac9c6be1f841727e0 *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
a41f234a26fcf520b59cd059962d949d *Meta/hsearch.rds
610400faa28a6b5877a708c00fd70da1 *Meta/links.rds
ecdbe26876fea8ec3259f887c6a1e907 *Meta/nsInfo.rds
b0901ffc6e262dc260badad2c75089c1 *Meta/package.rds
8388d0e722024dc9efe62673d30e1ce1 *Meta/vignette.rds
d16a08dcb01db5d9628367e8ce4e09a0 *NAMESPACE
cbc7f6cb31ce547c75224498369a95eb *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/icetea
6129cd4e841d9b921a93c4eae9b14db4 *R/icetea.rdb
a708440536ee60dfdb17629760598aea *R/icetea.rdx
d81ababe1141aeea21b05124813d1e41 *doc/index.html
034e10cf6c41d3c1dae8cc3c27917fa1 *doc/mapcap_analysis.R
e9a45049b7fb37f1e1a3bec42fe17b45 *doc/mapcap_analysis.Rmd
2310c2e6db87ef28f56be290e6588fdc *doc/mapcap_analysis.html
de8b916f9c226200f79c6f55feb85f55 *extdata/bam/embryo1.bam
91e831f3cd3c9f15a9cbc65a5256bdb2 *extdata/bam/embryo1.bam.bai
6f81004281be96947b0a7aec3fd708e9 *extdata/bam/embryo2.bam
d1a7d506ca48f8dfb57fdd27040e8f8f *extdata/bam/embryo2.bam.bai
6f6a1daa30ac3259ea3446b972abcb30 *extdata/bam/embryo3.bam
e9de33af380be5880cfac7aaec779d24 *extdata/bam/embryo3.bam.bai
aec2b788554ef9596a83903bf43de44e *extdata/bam/embryo4.bam
d8936a1cd8f09891df42ecc85f49424a *extdata/bam/embryo4.bam.bai
0c3c740f5e29282a59189275a59021fd *extdata/demult_fastq/embryo1_R1.fastq.gz
bb8a38293ae9c019a76ce993f1acd7ed *extdata/demult_fastq/embryo1_R2.fastq.gz
4b5ba8fca80d6db6eb9a806c1559e828 *extdata/demult_fastq/embryo2_R1.fastq.gz
260725b25ec4e7e437701e2e8f6a6537 *extdata/demult_fastq/embryo2_R2.fastq.gz
d454f40af936e291683c07234337c40b *extdata/demult_fastq/embryo3_R1.fastq.gz
2f4738c18f72cf9bbe1fbe8ac2bf3d2a *extdata/demult_fastq/embryo3_R2.fastq.gz
33836d593cf2d34191e6d9105c28a907 *extdata/demult_fastq/embryo4_R1.fastq.gz
66177ebfbe632de38653de30e626b104 *extdata/demult_fastq/embryo4_R2.fastq.gz
5892afab3371f7e667c4cd3ffa09f4c0 *extdata/filtered_bam/embryo1.filtered.bam
1d08ad34edc7c3dc9969510759247ac8 *extdata/filtered_bam/embryo1.filtered.bam.bai
2cd6075b990efdd8c87fae97df066e06 *extdata/filtered_bam/embryo2.filtered.bam
567e663f982757e1400a5dd3aefd6279 *extdata/filtered_bam/embryo2.filtered.bam.bai
76e22c135d7a09158387e33ca6d1ff9a *extdata/filtered_bam/embryo3.filtered.bam
3648e402b54371182c11737b521615b2 *extdata/filtered_bam/embryo3.filtered.bam.bai
f245afc12a17c7eff49f9d37f803ac72 *extdata/filtered_bam/embryo4.filtered.bam
c417c9d32ffbab6cfb1a11fc6996e409 *extdata/filtered_bam/embryo4.filtered.bam.bai
f9d63ca9f8a24353ec3282ace47b1a41 *extdata/mapcap_test_R1.fastq.gz
c501e7171f176d240536655600de70ed *extdata/mapcap_test_R2.fastq.gz
57e4621cc32dbcd98aac583bcbc152be *extdata/testTSS_grl.rds
2d25320c06c1ce89e17f5eac3b14db60 *extdata/testTSS_merged.bed
c438c1704a666d443a1e360b68a5cbfb *help/AnIndex
3a3c986bf8177662a5722ea28d149580 *help/aliases.rds
f58566705303038d37cec5d1841a01e4 *help/icetea.rdb
9f42419dd501222f7743594fbad7789d *help/icetea.rdx
12d9454e491d4002000670b12c50014c *help/paths.rds
85dc8a129ad2f6addd985e65196acb90 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
7a0b25d3eaa05d53a6713c1b189ee2cb *html/ResizeReads.html
32f3f503450dca5c1b8909b438537581 *html/activeChrs.html
cead35d3f109b6a378cc975b09c1645b *html/annotateTSS.html
1bc2530946049a7ee2b6631e7005bec1 *html/check_capSet.html
416e508daa6541600fb4f81381b0e35e *html/demultiplexFASTQ.html
879e4e8ca84809cf15f6b9d9f87f86c5 *html/detectDiffTSS.html
aa978030e061a03a884d281cc5f47fdd *html/detectTSS.html
d786c5e26e0ed61158229021060d9b6e *html/diffQCplots.html
02511701675b597b36c910fdb1ba79a8 *html/exampleCSobject.html
480af40b08c52e366d810c6526376d3b *html/exportTSS.html
39ca6d08e87dc7fa3bc284b95f4ed0e8 *html/filterDuplicates.html
cf99a498636b3dc9eefebcb63ee84785 *html/filterDups.html
73ecc64bf9eea74996f5ba4f31e4248e *html/fitDiffTSS.html
3e6909f967105a6d2dd06af35d5c2fa6 *html/getBamFlags.html
77997f360ad7c5a9cfc02a3db0ce64e6 *html/getChromBins.html
401a0962c5f9a80b30a2cf58e881f0d1 *html/getChromWindows.html
cd3bfbf2ab3284101b2614b8059429fa *html/getGeneCounts.html
9b6593066b6ae742503e02b94014222e *html/getMCparams.html
4d4540b0a67088b3515c653d8d102934 *html/getNormFactors.html
3fae9b683d88d1e5feb0132e5f7514c1 *html/get_newfastq.html
318987598144a8a0a842cc54bc31eeb7 *html/getranks.html
853eb3388c14f94e20e8b0a8d6609aa4 *html/mapCaps.html
80372eb158b05dbc0101039dfbebc7cf *html/newCapSet.html
db1fe3853a843b0807bfe865dfb14421 *html/numReadsInBed.html
1d16817120cea37168070b52bb5d96af *html/plotPrecision.html
fec647d02947693a1a7ef40c9edb9676 *html/plotReadStats.html
bf38cfd495337d623ef019d047324670 *html/plotTSSprecision.html
7d0b1a915fd15ffe260a86dd4ea5e9c9 *html/sampleInfo.html
5a22c72577c86c21f66721bef45eac30 *html/splitBAM_byIndex.html
51f0929bffd2f8aeb5a9eee45b4a4b5e *html/splitBAM_byRepindex.html
6cd1aa9d5efc04ac5542458fa11407b9 *html/split_fastq.html
21442bd02f8a2781455856ad0c04a5dc *html/splitranks.html
ddf0742c0074103fd8f02f8c8012c88b *html/strandBinCounts.html
