Relational genesets

Description

Relational genesets

Usage

rgsets

Format

An object of class R6ClassGenerator of length 24.

Arguments

gsets

A list of genesets where list names refers to geneset labels and values are geneset members represented as a vector

nodes

A data frame of labeled nodes e.g.

	label
G1	Geneset 1
G2	Geneset 2
G3	Geneset 3

edges

A data frame of directed edges

from	to
G1	G2
G1	G3

Methods

print(rgsets) shows some information about the object data

rgsets$subset(labels) returns an rgsets object subsetted on geneset labels

See Also

pvector

Examples

testdat <- readRDS(file.path(system.file("extdata", package="hypeR"), "testdat.rds"))
rgsets <- rgsets$new(gsets=testdat$gsets,
                     nodes=testdat$nodes,
                     edges=testdat$edges)