R: Loads the matrix of Enrichment Scores for a collection

loadESmatrix {gep2pep}

R Documentation

Loads the matrix of Enrichment Scores for a collection

Description

Loads the matrix of Enrichment Scores for a collection

Usage

loadESmatrix(rp, collection)

Arguments

`rp`	A repository created by `createRepository`.
`collection`	One of the names returned by `getCollections`.

Value

The matrix of Enrichment Scores (ES) of the Kolmogorov-Smirnov statistic for the pathway collection, if previously computed with buildPEPs. The entry i,j reports the ES for the pathway i, conditionj. If buildPEPs was not run, throws an error.

Examples


db <- loadSamplePWS()
repo_path <- file.path(tempdir(), "gep2pepTemp")

rp <- createRepository(repo_path, db)
geps <- loadSampleGEP()
buildPEPs(rp, geps)

loadESmatrix(rp, "c3_TFT")[1:5,1:2]

unlink(repo_path, TRUE)

[Package gep2pep version 1.7.0 Index]