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| gQTLBase-package | gQTLBase: infrastructure for eQTL, mQTL and similar studies |
| balancedFeatList | split featurenames of SummarizedExperiment according to tiling, or to achieve simple balance within seqnames |
| ciseStore | Class '"ciseStore"' |
| ciseStore-class | Class '"ciseStore"' |
| describeByFilts | collect basic descriptive statistics on ciseStore instances |
| describeStore | collect basic descriptive statistics on ciseStore instances |
| extractByProbes | retrieve eqtlTest results from a ciseStore instance |
| extractByProbes-method | retrieve eqtlTest results from a ciseStore instance |
| extractByRanges | retrieve eqtlTest results from a ciseStore instance |
| extractByRanges-method | retrieve eqtlTest results from a ciseStore instance |
| extractBySymbols | retrieve eqtlTest results from a ciseStore instance |
| extractBySymbols-method | retrieve eqtlTest results from a ciseStore instance |
| gQTLBase | gQTLBase: infrastructure for eQTL, mQTL and similar studies |
| loadAndFilterResult | use batchMapResults infrastructure to process results in a ciseStore instance |
| matprint | gQTLBase: infrastructure for eQTL, mQTL and similar studies |
| mergeCIstates | merge ChromImpute chromatin states, or GWAS hit indicators, to a GRanges |
| mergeGWhits | merge ChromImpute chromatin states, or GWAS hit indicators, to a GRanges |
| show | collect basic descriptive statistics on ciseStore instances |
| show-method | Class '"ciseStore"' |
| show-method | collect basic descriptive statistics on ciseStore instances |
| storeApply | apply a function over job results in a ciseStore instance |
| storeDescription-class | collect basic descriptive statistics on ciseStore instances |
| storeMapResults | use batchMapResults infrastructure to process results in a ciseStore instance |
| storeToFf | extract a vector from store results as ff (out of memory reference); support statistical reductions |
| ufeatByTiling | split featurenames of SummarizedExperiment according to tiling, or to achieve simple balance within seqnames |