| get_nets {fcoex} | R Documentation |
Creates network visualizations based on the adjacency matrix obtained with the find_cbf_modules method
get_nets(fc, n = 10, min_elements = 5, ...) ## S4 method for signature 'fcoex' get_nets(fc, n = 10, min_elements = 5, ...)
fc |
Object of class |
n |
number of nodes to label |
min_elements |
Minimum number of elements in a module for it to be plotted. Defaults to 5. |
... |
Optional parameters. |
Object of class fcoex with profile plots
library(SingleCellExperiment)
data("mini_pbmc3k")
targets <- colData(mini_pbmc3k)$clusters
exprs <- as.data.frame(assay(mini_pbmc3k, "logcounts"))
fc <- new_fcoex(exprs, targets)
fc <- discretize(fc)
fc <- find_cbf_modules(fc)
fc <- get_nets(fc)