plot.epiScreen {epiNEM} | R Documentation

## Plot screen.

### Description

Plots the sresults of a systematic knock-out screen

### Usage

    ## S3 method for class 'epiScreen'
    plot(
      x,
      global = TRUE,
      ind = NULL,
      colorkey = TRUE,
      cexGene = 1,
      off = 0.05,
      cexLegend = 1,
      ...
    )

### Arguments

`x` | object of class epiScreen
`global` | plot global distribution or for each pair (FALSE)
`ind` | index of pairs to plot
`colorkey` | if TRUE prints colorkey
`cexGene` | size of modulator annotation
`off` | relative distance from the gene names to the respective likelihoods
`cexLegend` | font size of the legend
`...` | other arguments

### Value

plot(s) of an epiNEM screen analysis

### Examples

    data <- matrix(sample(c(0,1), 100*9, replace = TRUE), 100, 9)
    colnames(data) <- c("A.B", "A.C", "B.C", "A", "B", "C", "D", "E", "G")
    rownames(data) <- paste("E", 1:100, sep = "_")
    res <- epiScreen(data)
    plot(res)
    plot(res, global = FALSE, ind = 1:3)

[Package epiNEM version 1.11.11 Index]