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| barplot.enrichResult | barplot |
| cnetplot | cnetplot |
| cnetplot-method | cnetplot |
| cnetplot.enrichResult | cnetplot |
| color_palette | color_palette |
| dotplot | dotplot |
| dotplot-method | dotplot |
| dotplot-method | dotplot |
| emapplot | emapplot |
| emapplot-method | emapplot |
| emapplot.enrichResult | emapplot |
| fortify.compareClusterResult | fortify |
| fortify.enrichResult | fortify |
| ggtable | ggtable |
| goplot | goplot |
| goplot-method | goplot |
| goplot.enrichResult | goplot |
| gseadist | gseadist |
| gseaplot | gseaplot |
| gseaplot-method | gseaplot |
| gseaplot.gseaResult | gseaplot |
| gseaplot2 | gseaplot2 |
| gsearank | gsearank |
| gsInfo | gsInfo |
| heatplot | heatplot |
| heatplot-method | heatplot |
| heatplot.enrichResult | heatplot |
| list2graph | convert gene IDs to igraph object |
| plotting.clusterProfile | plotting-clusterProfile |
| pmcplot | pmcplot |
| ridgeplot | ridgeplot |
| ridgeplot-method | ridgeplot |
| ridgeplot.gseaResult | ridgeplot |
| upsetplot | upsetplot method |
| upsetplot,gseaResult | upsetplot method |
| upsetplot-method | upsetplot method |