97d1cb27e8478d7ae4de59a2de8c86e7 *CITATION
65de949b3de11914424eb09a65b50d1e *DESCRIPTION
82aad66b16517c9991aa8cae64982337 *INDEX
33bee3c0a732634333ee33ca129c71d1 *Meta/Rd.rds
c8de5ae4fc029fc77b919754a3fda368 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
7a29c3f33a2437f2293b770600e5bedf *Meta/hsearch.rds
bdf29b1269fe35760d289ec5e1b1103f *Meta/links.rds
410397ff57a67043b050ebd26af8e912 *Meta/nsInfo.rds
b88bb62b354dea5ee6129e96a6833ebc *Meta/package.rds
19b18c02d03c9a58661c1c328ce7c08c *Meta/vignette.rds
e096c80e50b90520bbd9b8ac19805a4c *NAMESPACE
8ada7993428fbe4013f2164a0f29f319 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/deepSNV
26482e6f59877a8817d1588b3ab2c506 *R/deepSNV.rdb
88c936c0604727d949f062a1aa812aad *R/deepSNV.rdx
eb93e43e868cf6b00523766e2093961c *TODO
3ccecc236923abcec5bf3979f95058ec *data/HIVmix.RData
e5e59d311d41716d436bda6c12d6b6f8 *data/RCC.RData
44fe941582b98ed2fb74a2ff43bd04dc *data/counts.RData
8f473e99da6aea7893fbf4f0967161a5 *data/phiX.RData
39946182d2a7087db51be00e27bfe68e *data/pi.RData
a198b59b439c25594d85e0f8c8afc300 *data/trueSNVs.RData
b668e30fc1bc1b8c1f60ad1dbaff8772 *doc/deepSNV.R
79ea907278cca8011a87b7954bfc02ce *doc/deepSNV.Rnw
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db14767c6110ae0364ac7e64e94d5518 *doc/index.html
92e9aece07ac3612437ffc3be5c5823f *doc/shearwater.R
fc4e56aed626edbec5e35a7c0ac725b0 *doc/shearwater.Rnw
dea18f523399697b6b9d62e3d4678780 *doc/shearwater.pdf
b17ebdace526e32bc2eaa51e7361ade4 *doc/shearwaterML.R
866271256074ead132c1e1225b663bac *doc/shearwaterML.Rmd
061603c8c4c651681a2f8884daef2028 *doc/shearwaterML.html
03adcf464008b8e2642cdb62807764d3 *example/deepSNV-example.R
f3dd841413d42161102b4b371b8b8e8f *example/shearwater-example.R
62e3352bca95588f9d1478ae36f1ed83 *extdata/control.bam
a3507164d703e922651e0e56236bc293 *extdata/control.bam.bai
89aadac87ae16155e52a1d89289428ae *extdata/deepSNV.vcf
965814f871f749638f925cc6f77d2a38 *extdata/shearwater.vcf
42fb5eb22aef228e8ed4b84294131350 *extdata/shearwater2.vcf
f739c8d70ed095483959c826f2cc3f53 *extdata/shearwaterML.vcf
6af3a3077f6d4ab936e1bb777ad8e910 *extdata/test.bam
74ceb014e38fe7f5111bc9d501889a5e *extdata/test.bam.bai
2df1a587bda6e4c60cc283dfd468cbaa *help/AnIndex
18b54fdbca512152d2e0dd1354e82b29 *help/aliases.rds
5e7ddc4a47362eaa4ccf3d80dbf42356 *help/deepSNV.rdb
e22cb2837d886c9faeb35487be718940 *help/deepSNV.rdx
16822ba3051eda10cf7da526bb99989b *help/paths.rds
720c2b0cf9c944154324ac192c0eb930 *html/00Index.html
d857834ded33f7b4d51e05405c475e26 *html/Extract-methods.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
92b68d0443bbf5f5fa1ad75d9c2e6f1e *html/RCC.html
a8542436d11adccb3032fc0eec9f2450 *html/RF.html
28af00b3f3c3f54c60dbd04693b1ffaa *html/bam2R.html
87729ad2d6fb22b97c9b52befad69226 *html/betabinLRT.html
41643f41212fa9b8191ef704f1c719ba *html/bf2Vcf.html
5e79c2f110e17efd4aac2eba90c490f6 *html/consensusSequence-methods.html
b32f747665338e7b93daa4874e0a33c6 *html/control-methods.html
ccb1152254ddecb38be967910b674122 *html/coordinates-methods.html
673ebd6f010b526d9a4d412520bba187 *html/counts.html
8648855f4fa492d57e032afc03e9b656 *html/dbetabinom.html
7915cdf0626e57c7d9f69dc4be680631 *html/deepSNV-class.html
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812df75896674e3bd5cf1960ca2289f8 *html/estimateDirichlet-methods.html
31e0611c53131dce0fada9394dfaf549 *html/estimateDispersion-methods.html
4ec8d17c01637f8ba54a523817f62819 *html/estimateRho.html
46a98efd179f3ed23a84233a07c67809 *html/loadAllData.html
f4af74071db9403807939e70151dfa8e *html/makePrior.html
185fd671737d83cd89c862d41d3cbb1b *html/manhattanPlot.html
4a8326af1b816e71a4d49478c2b67cdc *html/mcChunk.html
6a24daafb5e7d6f4fd0e37bda3b4f308 *html/normalize-methods.html
80b6a6bb76e96dba19a0253238c4e68a *html/p.combine.html
9d175643ecdc632aec0c6e6d90447f7a *html/p.val-methods.html
35073475b0254fdbb155e33298c15866 *html/pbetabinom.html
346bbdb6de63a7601870c03788e2730a *html/phiX.html
664bca00c72d265a045e9a271e0d71ed *html/pi.html
5a8eaaa689428ec7ca18156f0315009d *html/plot.deepSNV.html
c81c63fc3368ff3828844b414ea3b9aa *html/qvals2Vcf.html
86805ede87755c3f7550e1781c73f00d *html/repeatMask-methods.html
cfc0824584e29871abc623a78636218b *html/shearwater.html
4087a975c6338c09753e152db5cdb2b7 *html/show-deepSNV-method.html
3d7a5c65fe95f67d8c4fde7388e14192 *html/summary-methods.html
b54d808408311bff72d0c4c146fe906b *html/test-methods.html
4c5b36c5f9ec35117cfa7da98d743786 *html/trueSNVs.html
36e535bf220e5369822a3bad630d3a70 *libs/i386/deepSNV.dll
85431f3e7ab663194d5468fe542f1946 *libs/x64/deepSNV.dll
