Decomposing Heterogeneous Cohorts using Omic Data Profiling

Documentation for package ‘deco’ version 1.3.0

deco-package	DECO: DEcomposing heterogeneous Cohorts from Omic profiling.
ALCLdata	Subset of microarray gene expression data from Anaplastic Large Cell Leukemia disease.
AnnotateDECO	DECO annotating function
deco	DECO: DEcomposing heterogeneous Cohorts from Omic profiling.
deco-class	Class '"deco"'
decoNSCA	Non-Symmetrical Correspondence Analysis (NSCA) applied to a subsampled dataset
decoRDA	Subsampling function to find out differential events along samples from an omic dataset
decoReport	Report of DECO analyisis
featureTable	Accessor to 'featureTable' slot of 'deco-class' objects.
featureTable-method	Class '"deco"'
NSCAcluster	Accessor to 'NSCAcluster' slot of 'deco-class' objects.
NSCAcluster-method	Class '"deco"'
plotAssociationH	Plot to visualize association among DECO subclasses and sample information (phenotype).
plotDECOProfile	Feature profile from DECO analysis
plotGainingH	Gaining plots for using h-statistic instead original omic data.
plotHeatmapH	Heatmap corresponding to h-statistic matrix provided by DECO analysis.
show-method	Class '"deco"'
summary-method	Class '"deco"'