Package: cytomapper
Version: 0.99.5
Title: Visualization of highly multiplexed imaging cytometry data in R
Description: 
    Highly multiplexed imaging cytometry acquires the single-cell expression of
    selected proteins in a spatially-resolved fashion. These measurements can be
    visualized across multiple length-scales. First, pixel-level intensities
    represent the spatial distributions of feature expression with highest
    resolution. Second, after segmentation, expression values or cell-level
    metadata (e.g. cell-type information) can be visualized on segmented cell
    areas. This package contains functions for the visualization of multiplexed
    read-outs and cell-level information obtained by multiplexed imaging
    cytometry. The main functions of this package allow 1. the visualization of
    pixel-level information across multiple channels and 2. the display of
    cell-level information (expression and/or metadata) on segmentation masks.
Authors@R: 
    c(person("Nils", "Eling", role = c("aut", "cre"), 
      email = "nils.eling@dqbm.uzh.ch",
      comment = c(ORCID = "0000-0002-4711-1176")),
      person("Nicolas", "Damond", role = c("aut"), 
      email = "nicolas.damond@dqbm.uzh.ch", 
      comment = c(ORCID = "0000-0003-3027-8989")))
License: GPL (>= 2)
Depends: R (>= 4.0), EBImage, SingleCellExperiment, methods
Imports: S4Vectors, RColorBrewer, viridis, utils, SummarizedExperiment,
        tools, graphics, raster, grDevices, stats
Suggests: BiocStyle, knitr, rmarkdown, testthat
biocViews: ImmunoOncology, Software, SingleCell, OneChannel,
        TwoChannel, MultipleComparison, Normalization, DataImport
VignetteBuilder: knitr
URL: https://github.com/BodenmillerGroup/cytomapper
BugReports: https://github.com/BodenmillerGroup/cytomapper/issues
RoxygenNote: 7.1.0
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/cytomapper
git_branch: master
git_last_commit: 03f6dee
git_last_commit_date: 2020-04-10
Date/Publication: 2020-04-14
NeedsCompilation: no
Packaged: 2020-04-15 04:55:28 UTC; biocbuild
Author: Nils Eling [aut, cre] (<https://orcid.org/0000-0002-4711-1176>),
  Nicolas Damond [aut] (<https://orcid.org/0000-0003-3027-8989>)
Maintainer: Nils Eling <nils.eling@dqbm.uzh.ch>
Built: R 4.0.0; ; 2020-04-15 15:24:01 UTC; windows
