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| cellCounts | Extract cell counts from cfList |
| cfList | Class cfList |
| cfList-class | Class cfList |
| counts | Class cfList |
| counts-method | Class cfList |
| cytoBoxplots | Draw boxplots for cfList |
| cytoHeatmaps | Draw heatmaps for cfList |
| cytottest | preform t-test on cfList |
| drawTree | Draw a dendogram with ggplot |
| expr | Class cfList |
| expr-method | Class cfList |
| msiPlot | Draw a density (median signal intensity) plot |
| readCytosploreFCS | Read .fcs files created by cytosplore |
| results | Class cfList |
| results-method | Class cfList |
| samples | Class cfList |
| samples-method | Class cfList |
| show-method | Class cfList |
| spitzer | Spitzer meta file |
| [-method | Extract parts of cfList |