makeCellTree {ctgGEM}R Documentation

A Cell Tree Generating Function using cellTree

Description

This function, called by generate_tree, creates a cell tree using the data and the cellTree package. This function utilizes code from the cellTree vignette R script.

Usage

makeCellTree(dataSet, outputDir = NULL)

Arguments

dataSet

a ctgGEMset object

outputDir

the directory where output should be saved, defaults to the temporary location returned by tempdir()

Value

an updated ctgGEMset object


[Package ctgGEM version 0.99.3 Index]