heatmap.3 An improved heatmap plotting

Description

The code is from https://github.com/obigriffith/biostar-tutorials/tree/master/Heatmaps

Usage

heatmap.3(x, Rowv = TRUE, Colv = if (symm) "Rowv" else TRUE,
  distfun = dist, hclustfun = hclust, dendrogram = c("both", "row",
  "column", "none"), symm = FALSE, scale = c("none", "row", "column"),
  na.rm = TRUE, revC = identical(Colv, "Rowv"), add.expr, breaks,
  symbreaks = max(x < 0, na.rm = TRUE) || scale != "none",
  col = "heat.colors", colsep, rowsep, sepcolor = "white",
  sepwidth = c(0.05, 0.05), cellnote, notecex = 1, notecol = "cyan",
  na.color = par("bg"), trace = c("none", "column", "row", "both"),
  tracecol = "cyan", hline = median(breaks), vline = median(breaks),
  linecol = tracecol, margins = c(4, 2), ColSideColors, RowSideColors,
  side.height.fraction = 0.3, cexRow = 0.2 + 1/log10(nr),
  cexCol = 0.2 + 1/log10(nc), labRow = NULL, labCol = NULL,
  key = TRUE, keysize = 1.5, density.info = c("none", "histogram",
  "density"), denscol = tracecol, symkey = max(x < 0, na.rm = TRUE) ||
  symbreaks, densadj = 0.25, main = NULL, xlab = NULL, ylab = NULL,
  lmat = NULL, lhei = NULL, lwid = NULL, ColSideColorsSize = 1,
  RowSideColorsSize = 1, KeyValueName = "Value", ...)

Value

a heatmap figure

Author(s)

Obi Griffith