summarizeWindowBps {cn.farms}R Documentation

Combines neighbouring locations to windows

Description

Combines neighbouring locations to windows

Usage

summarizeWindowBps(phInf, fixedBps = 10000, upperLimit = 6)

Arguments

phInf

The locations on the chromosomes.

fixedBps

Size of the window in basepairs.

upperLimit

Maximal number of neigbouring locations to combine.

Value

Indices for summarization

Author(s)

Djork-Arne Clevert okko@clevert.de and Andreas Mitterecker mitterecker@bioinf.jku.at

Examples

## create toy physical data
sizeTmp <- 30
phInf <- data.frame(
        chrom = rep("15", sizeTmp),
        start = seq(from = 1, by = 300, length.out = sizeTmp),
        end = seq(from = 3600, by = 300, length.out = sizeTmp),
        man_fsetid = paste("SNP_A-", seq(sizeTmp)+1000, sep = ""))
summarizeWindowBps(phInf)
[Package cn.farms version 1.35.4 Index]