39034a022b44b71accb8a114e57e5be9 *CITATION
85f245251602b51b6adc5ecbee65b011 *DESCRIPTION
207abd201b2b2daed3f306f41beef8dc *INDEX
def8289201f5fad0ff28f3c66036b135 *LICENSE
7228fca548e8873f0ca8fb90053f64cf *Meta/Rd.rds
42335b75d6fc9887752b83d683379ef1 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
8a139a5c7d7e1f7d74eb4460bbbcc695 *Meta/hsearch.rds
a7677ed96876840b8ee94959e9524f25 *Meta/links.rds
aafafdecb51d3d946cb6537529190416 *Meta/nsInfo.rds
47201cd9c8aaee1ce83dcf3f138ffea1 *Meta/package.rds
1e7b59529adc1202b5ed13b2f19ee4ef *Meta/vignette.rds
3d74afcab29515a201fb296fab700e1c *NAMESPACE
55d4c2fbda4af4be12535fc165f0108d *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/chromVAR
e2bcb3d43220c51954fc0e5871cf7c59 *R/chromVAR.rdb
bc0e0719341c04b15a9901175fb86909 *R/chromVAR.rdx
8ff36292a399f01ae9e99664f37c7d85 *data/Rdata.rdb
8b78b04522cbc6a88711618d97f1dc6a *data/Rdata.rds
d45aa291606c23523fcf3c1f7f2fdb85 *data/Rdata.rdx
fcf9a9a4ab81cdf42fe2cf303dad457a *doc/Introduction.R
e647fb1ca704e41c4dde1a28c3699c58 *doc/Introduction.Rmd
a38c2595f17378b6743a8577dd2398d0 *doc/Introduction.html
74eec24b7843631f00f81d9ac7f5d09b *doc/index.html
37671395b9c407b9ed11352bc82663a3 *extdata/counts_table.tsv
7ce6288e99ae8090330521cb7abc36c3 *extdata/deviations_test
53b91a90f865db1aa8962e74070bb50d *extdata/test_RG.bam
dd22824ae0fda9c8a28a56b6086e299c *extdata/test_anno1.bed
a6f21fe0ee54c6b2ef11554813855bfe *extdata/test_anno2.bed
dffb9788cdf37768e4c7c79a5778ae1a *extdata/test_anno3.bed
ac7477a2442c78df7f6fe512c1cf2f24 *extdata/test_bed.txt
0758f21767f496e0ac79ce0a5f1c081e *extdata/test_reads.bed
ce6a7cb84bea1705a346e7cee91f227f *extdata/test_single1.bam
ac67fa8497bab48baa76dfb26377c085 *extdata/test_single2.bam
6a3b3010792c48ae4ea1a0e23987d89b *extdata/test_single3.bam
0fabb5a43c629041d434835250f017e2 *help/AnIndex
a3288d89bba6ceaa01a5400e5f54640a *help/aliases.rds
c7d189187a8090a6a2d82a2910582c8c *help/chromVAR.rdb
a8debf9a4da3431bdacf174035e47561 *help/chromVAR.rdx
258993b43c76bfde3558fd70ca2ca189 *help/paths.rds
3bab807e6587090a74f01bd2234e8354 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
07569a7ff905001750fe9e3f5dd4d19c *html/addGCBias.html
7f8864f02b222a5b145dc5fd81bcd7d5 *html/annotationMatches.html
f7f32e07374970ec080a282f72a32302 *html/assembleKmers.html
56ab7791616840077b40587f84cd8b2a *html/cbind-chromVARDeviations-method.html
ac59fff7418970228f496786f06304d7 *html/chromVAR.html
567204922243008f5db1aa5259163b44 *html/chromVARDeviations-class.html
8435fb2951eaeb9b41c195416554d982 *html/chromVAR_theme.html
7acdc28702602cc1c06fb39b50ed5b3c *html/computeDeviations.html
5bbe7d30e3240377f0fdbf108117bea9 *html/computeExpectations.html
347e4e21084cc5852f38ca7ad623785f *html/computeVariability.html
37f9c1091f9adb86a1b83877b173bc3c *html/counts.html
4f863fe0fa0029f0995065613aa139fe *html/deviationScores.html
d0936088249156d728cd80c1cfc19968 *html/deviations.html
2a58939a211fb31fc608f16138f209bb *html/deviationsCovariability.html
1678da23121a3015201587a56a9749e5 *html/deviationsTsne.html
f048b3d28c5b7ea7ebc023e2f9f318ad *html/differentialDeviations.html
d1b531f24c0bb686b0766c3bc849128d *html/differentialVariability.html
70ca41e9a8d2049fc54e4a631dcb981f *html/example_counts.html
e62bb606fded7db00025522688724eef *html/filterPeaks.html
ca650907b23b3364c8e308671c85aade *html/filterSamples.html
11746e5f5c36982af3c768400799633c *html/filterSamplesPlot.html
fa03ce7ce32ffc1a464719c6b09c1b60 *html/getAnnotationCorrelation.html
0812b74423c519d9472f8c35b64c3771 *html/getAnnotationSynergy.html
9f3ade66b74b3b681695a0c73cdbc64d *html/getAnnotations.html
6927d88ee4b0d006907076ee6b505e09 *html/getBackgroundPeaks.html
bee9e763ca5d610438fbff8f75325cd0 *html/getCisGroups.html
0e6905c1bc5e1370e4c65be5f2666ce0 *html/getCounts.html
295098b89941117a699669b795a825bf *html/getFragmentsPerPeak.html
9ae0db5b1c7aab56890fdd22c6834df2 *html/getFragmentsPerSample.html
4e110b842b6a01488311ac3f8ab4c112 *html/getJasparMotifs.html
ea97079471de2dec5332e242b2df28b5 *html/getPeaks.html
27d795cf0837fa55658997a33ff2ad8b *html/getPermutedData.html
417be4ffe04f1afb89a7ceb44d337dc8 *html/getSampleCorrelation.html
53e153447db62456308d5ee29df4bcc7 *html/getSampleDepths.html
9a7db84846d913de8d24141fb9758ca5 *html/getSampleDistance.html
70f3477844a0ce52533474def12d755b *html/getTotalFragments.html
3ee73607fcdf74fce08a902d82b945df *html/makeBiasBins.html
476f7034c52fa30af209c4b574f52b8f *html/makePermutedSets.html
b606e9d2737063984dea2b969e1d6e82 *html/matchKmers.html
6fdc5fc483e94f6be104058d512ffec5 *html/mini_counts.html
3031fc0d0cfb04685f2f74c1b47598a0 *html/mini_dev.html
1b05e6017d72554448ef196fb42e5c14 *html/mini_ix.html
5b30e7a9aa5abeaf9ac85f32dd9a81f2 *html/plotDeviationsTsne.html
9520d82d6f261abff9322ef7d284b444 *html/plotKmerMismatch.html
663fc0ba3d94de6e6cd678c25b15e744 *html/plotVariability.html
d212f28a96ab5618060673c528fd45d1 *html/pwmDistance.html
fafe32c260e9087892fedd139061aa14 *html/rbind-chromVARDeviations-method.html
e638375e3772bd9004ac283faab7711b *html/readNarrowpeaks.html
bdd5e225591001c369b4d59967f958c6 *libs/i386/chromVAR.dll
397d9e872afc855c5fd404aca372ef67 *libs/x64/chromVAR.dll
