Load an ENCODE gene expression data

Description

Load an ENCODE gene expression data

Usage

prepareENCODEgeneExpression(samples)

Arguments

Value

Data frame containing gene read counts

See Also

convertENSEMBLtoGeneSymbols

Other functions related with using ENCODE expression data: downloadENCODEknockdownMetadata, loadENCODEsamples, performDifferentialExpression

Examples

if (interactive()) {
  # Load ENCODE metadata for a specific cell line and gene
  cellLine <- "HepG2"
  gene <- "EIF4G1"
  ENCODEmetadata <- loadENCODEknockdownMetadata(cellLine, gene)

  # Load samples based on filtered ENCODE metadata
  ENCODEsamples <- loadENCODEsamples(ENCODEmetadata)[[1]]

  prepareENCODEgeneExpression(ENCODEsamples)
}