| plotTargetingDrugsVSsimilarPerturbations {cTRAP} | R Documentation |
Plot similar perturbations against predicted targeting drugs
plotTargetingDrugsVSsimilarPerturbations(targetingDrugs, similarPerturbations, column, labelBy = "pert_iname", quantileThreshold = 0.25, showAllScores = FALSE)
targetingDrugs |
|
similarPerturbations |
|
column |
Character: column to plot (must be available in both databases) |
labelBy |
Character: column in |
quantileThreshold |
Numeric: quantile to use for highlight values within [0, 1] |
showAllScores |
Boolean: showl all scores? If |
ggplot2 plot
Other functions related with the ranking of CMap perturbations: [.perturbationChanges,
as.table.similarPerturbations,
dim.perturbationChanges,
dimnames.perturbationChanges,
filterCMapMetadata,
getCMapConditions,
getCMapPerturbationTypes,
loadCMapData,
loadCMapZscores, parseCMapID,
plot.perturbationChanges,
plot.referenceComparison,
prepareCMapPerturbations,
print.similarPerturbations,
rankSimilarPerturbations
Other functions related with the prediction of targeting drugs: loadExpressionDrugSensitivityAssociation,
plot.referenceComparison,
predictTargetingDrugs