parseCMapID {cTRAP}R Documentation

Parse CMap identifier

Description

Parse CMap identifier

Usage

parseCMapID(id, cellLine = FALSE)

Arguments

id

Character: CMap identifier

cellLine

Boolean: if TRUE, return cell line information from CMap identifier; else, return the CMap identifier without the cell line

Value

Character vector with information from CMap identifiers

See Also

Other functions related with the ranking of CMap perturbations: [.perturbationChanges, as.table.similarPerturbations, dim.perturbationChanges, dimnames.perturbationChanges, filterCMapMetadata, getCMapConditions, getCMapPerturbationTypes, loadCMapData, loadCMapZscores, plot.perturbationChanges, plot.referenceComparison, plotTargetingDrugsVSsimilarPerturbations, prepareCMapPerturbations, print.similarPerturbations, rankSimilarPerturbations

Examples

id <- c("CVD001_HEPG2_24H:BRD-K94818765-001-01-0:4.8",
        "CVD001_HEPG2_24H:BRD-K96188950-001-04-5:4.3967",
        "CVD001_HUH7_24H:BRD-A14014306-001-01-1:4.1")
parseCMapID(id, cellLine=TRUE)
parseCMapID(id, cellLine=FALSE)
[Package cTRAP version 1.5.0 Index]