Load ENCODE samples

Description

Samples are automatically downloaded if they are not found in the current working directory.

Usage

loadENCODEsamples(metadata)

Arguments

Value

List of loaded ENCODE samples

See Also

Other functions related with using ENCODE expression data: downloadENCODEknockdownMetadata, performDifferentialExpression, prepareENCODEgeneExpression

Examples

if (interactive()) {
  # Load ENCODE metadata for a specific cell line and gene
  cellLine <- "HepG2"
  gene <- c("EIF4G1", "U2AF2")
  ENCODEmetadata <- downloadENCODEknockdownMetadata(cellLine, gene)

  # Load samples based on filtered ENCODE metadata
  loadENCODEsamples(ENCODEmetadata)
}