| getCMapConditions {cTRAP} | R Documentation |
Downloads metadata if not available
getCMapConditions(metadata, cellLine = NULL, timepoint = NULL, dosage = NULL, perturbationType = NULL, control = FALSE)
metadata |
Data frame (CMap metadata) or character (respective filepath) |
cellLine |
Character: cell line (if |
timepoint |
Character: timepoint (if |
dosage |
Character: dosage (if |
perturbationType |
Character: type of perturbation (if |
control |
Boolean: show controls for perturbation types? |
List of conditions in CMap datasets
Other functions related with the ranking of CMap perturbations: [.perturbationChanges,
as.table.similarPerturbations,
dim.perturbationChanges,
dimnames.perturbationChanges,
filterCMapMetadata,
getCMapPerturbationTypes,
loadCMapData,
loadCMapZscores, parseCMapID,
plot.perturbationChanges,
plot.referenceComparison,
plotTargetingDrugsVSsimilarPerturbations,
prepareCMapPerturbations,
print.similarPerturbations,
rankSimilarPerturbations
## Not run:
cmapMetadata <- loadCMapData("cmapMetadata.txt", "metadata")
## End(Not run)
getCMapConditions(cmapMetadata)