biscuitMetadata {biscuiteer}R Documentation

Biscuit metadata from VCF header

Description

Returns metadata from a Biscuit run using either a supplied VCF file or the vcfHeader metadata element from the bsseq object

Usage

biscuitMetadata(bsseq = NULL, VCF = NULL)

getBiscuitMetadata(bsseq = NULL, VCF = NULL)

Arguments

bsseq

A bsseq object with a vcfHeader element (DEFAULT: NULL)

VCF

A tabix'ed VCF file (can just be the header information) from which the bsseq vcfHeader element is derived (DEFAULT: NULL)

Value

  Information regarding the Biscuit run

Functions

Examples


  orig_bed <- system.file("extdata", "MCF7_Cunha_chr11p15.bed.gz",
                          package="biscuiteer")
  orig_vcf <- system.file("extdata", "MCF7_Cunha_header_only.vcf.gz",
                          package="biscuiteer")
  bisc <- readBiscuit(BEDfile = orig_bed, VCFfile = orig_vcf,
                      merged = FALSE)

  meta <- biscuitMetadata(bisc)
[Package biscuiteer version 1.1.0 Index]