| getListProfData {bioCancer} | R Documentation |
get list of data frame with profiles data (CNA,mRNA, Methylation, Mutation...)
getListProfData(panel, geneListLabel)
panel |
Panel name (string) in which Studies are selected. There are two panels ("Circomics" or "Networking") |
geneListLabel |
The label of GeneList. There are three cases: "Genes" user gene list, "Reactome_GeneList" GeneList plus genes from reactomeFI "file name" from Examples |
A LIST of profiles data (CNA, mRNA, Methylation, Mutation, miRNA, RPPA). Each dimension content a list of studies.
cgds <- CGDS("http://www.cbioportal.org/")
## Not run:
geneList <- whichGeneList("73")
r_data <- new.env()
MutData <- cgdsr::getMutationData(cgds,"gbm_tcga_pub_all",
"gbm_tcga_pub_mutations", geneList )
FreqMut <- getFreqMutData(list(ls1=MutData, ls2=MutData), "73")
input <- NULL
input[['StudiesIDCircos']] <- c("luad_tcga_pub","blca_tcga_pub")
ListProfData <- getListProfData(panel= "Circomics","73")
## End(Not run)