| getGenesClassification {bioCancer} | R Documentation |
get genes classification
getGenesClassification(checked_Studies, GeneList, samplesize, threshold, listGenProfs, listCases)
checked_Studies |
checked studies |
GeneList |
gene list |
samplesize |
sample size |
threshold |
p-value threshold |
listGenProfs |
list of genetic profiles |
listCases |
list of cases |
A table with genes classed by study
cgds <- CGDS("http://www.cbioportal.org/")
listStudies <- cgdsr::getCancerStudies(cgds)
## Not run:
checked_Stdudies <- listStudies[3:5]
listCases <- getList_Cases(listStudies[1:3])
listGenProfs <- getList_GenProfs(listStudies[1:3])
GeneList <- c('P53', 'IFI16', 'BRCA1')
samplesize <- 50
threshold <- 0.95
table <- getGenesClassification(checked_Studies, GeneList,
samplesize ,threshold ,listGenProfs, listCases)
## End(Not run)